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WormBase Tree Display for Gene: WBGene00004808

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Name Class

WBGene00004808EvidenceCGC_data_submission
SMapS_parentSequenceF46A9
IdentityVersion1
NameCGC_nameskr-2Person_evidenceWBPerson322
Sequence_nameF46A9.4
Molecular_nameF46A9.4
F46A9.4.1
CE10578
Other_nameCELE_F46A9.4Accession_evidenceNDBBX284601
Public_nameskr-2
DB_infoDatabaseAceViewgene1K47
WormQTLgeneWBGene00004808
WormFluxgeneWBGene00004808
NDBlocus_tagCELE_F46A9.4
PanthergeneCAEEL|WormBase=WBGene00004808|UniProtKB=G5EDD8
familyPTHR11165
NCBIgene172773
RefSeqproteinNM_060111.7
TREEFAMTREEFAM_IDTF354233
TrEMBLUniProtAccG5EDD8
UniProt_GCRPUniProtAccG5EDD8
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:36WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classskr
Allele (18)
StrainWBStrain00036598
RNASeq_FPKM (74)
GO_annotation (19)
Ortholog (29)
Paralog (19)
Structured_descriptionConcise_descriptionskr-2 encodes a homolog of Skp1 in S. cerevisiae, a core component of the SCF (Skp1p, Cullin, F-box) ubiquitin-ligase complex that facilitates ubiquitin-mediated protein degradation; SKR-2 is required for the restraint of cell proliferation, progression through the pachytene stage of meiosis, and the formation of bivalent chromosomes at diakinesis; SKR-2::GFP is detected exclusively in the intestine.Paper_evidenceWBPaper00005128
WBPaper00005129
Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable cullin family protein binding activity. Involved in several processes, including establishment of mitotic spindle orientation; regulation of cell cycle; and regulation of protein stability. Part of SCF ubiquitin ligase complex. Expressed in intestine. Is an ortholog of human SKP1 (S-phase kinase associated protein 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF46A9.4
Corresponding_transcriptF46A9.4.1
Other_sequenceAF440506
Associated_featureWBsf656750
WBsf976899
WBsf976900
WBsf976901
WBsf218284
WBsf218285
Experimental_infoRNAi_resultWBRNAi00084257Inferred_automaticallyRNAi_primary
WBRNAi00104128Inferred_automaticallyRNAi_primary
WBRNAi00112067Inferred_automaticallyRNAi_primary
WBRNAi00104119Inferred_automaticallyRNAi_primary
WBRNAi00025525Inferred_automaticallyRNAi_primary
WBRNAi00112066Inferred_automaticallyRNAi_primary
WBRNAi00104108Inferred_automaticallyRNAi_primary
WBRNAi00106579Inferred_automaticallyRNAi_primary
WBRNAi00104109Inferred_automaticallyRNAi_primary
WBRNAi00104110Inferred_automaticallyRNAi_primary
WBRNAi00084256Inferred_automaticallyRNAi_primary
WBRNAi00078740Inferred_automaticallyRNAi_primary
WBRNAi00106725Inferred_automaticallyRNAi_primary
WBRNAi00072508Inferred_automaticallyRNAi_primary
WBRNAi00104124Inferred_automaticallyRNAi_primary
WBRNAi00104111Inferred_automaticallyRNAi_primary
WBRNAi00073574Inferred_automaticallyRNAi_primary
WBRNAi00078770Inferred_automaticallyRNAi_primary
WBRNAi00104112Inferred_automaticallyRNAi_primary
WBRNAi00078812Inferred_automaticallyRNAi_primary
WBRNAi00104122Inferred_automaticallyRNAi_primary
WBRNAi00104129Inferred_automaticallyRNAi_primary
WBRNAi00069083Inferred_automaticallyRNAi_primary
WBRNAi00077950Inferred_automaticallyRNAi_primary
WBRNAi00104123Inferred_automaticallyRNAi_primary
WBRNAi00073569Inferred_automaticallyRNAi_primary
WBRNAi00104107Inferred_automaticallyRNAi_primary
WBRNAi00112065Inferred_automaticallyRNAi_primary
WBRNAi00073573Inferred_automaticallyRNAi_primary
WBRNAi00104117Inferred_automaticallyRNAi_primary
WBRNAi00104118Inferred_automaticallyRNAi_primary
WBRNAi00112068Inferred_automaticallyRNAi_primary
WBRNAi00104133Inferred_automaticallyRNAi_primary
WBRNAi00112064Inferred_automaticallyRNAi_primary
WBRNAi00072510Inferred_automaticallyRNAi_primary
WBRNAi00104121Inferred_automaticallyRNAi_primary
WBRNAi00072509Inferred_automaticallyRNAi_primary
WBRNAi00104114Inferred_automaticallyRNAi_primary
WBRNAi00073567Inferred_automaticallyRNAi_primary
WBRNAi00112063Inferred_automaticallyRNAi_primary
WBRNAi00106598Inferred_automaticallyRNAi_primary
WBRNAi00073571Inferred_automaticallyRNAi_primary
WBRNAi00007728Inferred_automaticallyRNAi_primary
WBRNAi00098045Inferred_automaticallyRNAi_primary
WBRNAi00047473Inferred_automaticallyRNAi_primary
WBRNAi00104126Inferred_automaticallyRNAi_primary
WBRNAi00000057Inferred_automaticallyRNAi_primary
WBRNAi00104115Inferred_automaticallyRNAi_primary
WBRNAi00032340Inferred_automaticallyRNAi_primary
WBRNAi00104127Inferred_automaticallyRNAi_primary
WBRNAi00104116Inferred_automaticallyRNAi_primary
WBRNAi00104120Inferred_automaticallyRNAi_primary
WBRNAi00073570Inferred_automaticallyRNAi_primary
WBRNAi00073568Inferred_automaticallyRNAi_primary
WBRNAi00086781Inferred_automaticallyRNAi_primary
WBRNAi00116782Inferred_automaticallyRNAi_primary
WBRNAi00106271Inferred_automaticallyRNAi_primary
WBRNAi00104125Inferred_automaticallyRNAi_primary
WBRNAi00104130Inferred_automaticallyRNAi_primary
WBRNAi00104131Inferred_automaticallyRNAi_primary
WBRNAi00078797Inferred_automaticallyRNAi_primary
WBRNAi00073572Inferred_automaticallyRNAi_primary
WBRNAi00081317Inferred_automaticallyRNAi_primary
WBRNAi00104132Inferred_automaticallyRNAi_primary
WBRNAi00078702Inferred_automaticallyRNAi_primary
WBRNAi00025526Inferred_automaticallyRNAi_primary
WBRNAi00104113Inferred_automaticallyRNAi_primary
WBRNAi00094807Inferred_automaticallyRNAi_primary
WBRNAi00098119Inferred_automaticallyRNAi_primary
Expr_patternExpr2438
Expr1027946
Expr1032387
Expr1151309
Expr2015850
Expr2034083
Drives_constructWBCnstr00010828
WBCnstr00035374
Construct_productWBCnstr00010828
WBCnstr00035374
Regulate_expr_clusterWBPaper00050332:skr-1(RNAi)-skr-2(RNAi)_downregulated
AntibodyWBAntibody00002336
WBAntibody00002337
Microarray_results (17)
Expression_cluster (146)
Interaction (260)
WBProcessWBbiopr:00000068
Map_infoMapIPosition3.76667Error0.000462
PositivePositive_cloneF46A9Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
Reference (22)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene