WormBase Tree Display for Gene: WBGene00004808
expand all nodes | collapse all nodes | view schema
WBGene00004808 | Evidence | CGC_data_submission | |||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | F46A9 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | skr-2 | Person_evidence | WBPerson322 | |||||
Sequence_name | F46A9.4 | ||||||||
Molecular_name | F46A9.4 | ||||||||
F46A9.4.1 | |||||||||
CE10578 | |||||||||
Other_name | CELE_F46A9.4 | Accession_evidence | NDB | BX284601 | |||||
Public_name | skr-2 | ||||||||
DB_info | Database | AceView | gene | 1K47 | |||||
WormQTL | gene | WBGene00004808 | |||||||
WormFlux | gene | WBGene00004808 | |||||||
NDB | locus_tag | CELE_F46A9.4 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00004808|UniProtKB=G5EDD8 | |||||||
family | PTHR11165 | ||||||||
NCBI | gene | 172773 | |||||||
RefSeq | protein | NM_060111.7 | |||||||
TREEFAM | TREEFAM_ID | TF354233 | |||||||
TrEMBL | UniProtAcc | G5EDD8 | |||||||
UniProt_GCRP | UniProtAcc | G5EDD8 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | skr | ||||||||
Allele (18) | |||||||||
Strain | WBStrain00036598 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (19) | |||||||||
Ortholog (29) | |||||||||
Paralog (19) | |||||||||
Structured_description | Concise_description | skr-2 encodes a homolog of Skp1 in S. cerevisiae, a core component of the SCF (Skp1p, Cullin, F-box) ubiquitin-ligase complex that facilitates ubiquitin-mediated protein degradation; SKR-2 is required for the restraint of cell proliferation, progression through the pachytene stage of meiosis, and the formation of bivalent chromosomes at diakinesis; SKR-2::GFP is detected exclusively in the intestine. | Paper_evidence | WBPaper00005128 | |||||
WBPaper00005129 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable cullin family protein binding activity. Involved in several processes, including establishment of mitotic spindle orientation; regulation of cell cycle; and regulation of protein stability. Part of SCF ubiquitin ligase complex. Expressed in intestine. Is an ortholog of human SKP1 (S-phase kinase associated protein 1). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F46A9.4 | |||||||
Corresponding_transcript | F46A9.4.1 | ||||||||
Other_sequence | AF440506 | ||||||||
Associated_feature | WBsf656750 | ||||||||
WBsf976899 | |||||||||
WBsf976900 | |||||||||
WBsf976901 | |||||||||
WBsf218284 | |||||||||
WBsf218285 | |||||||||
Experimental_info | RNAi_result | WBRNAi00084257 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00104128 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00112067 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00104119 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00025525 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00112066 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00104108 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00106579 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00104109 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00104110 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00084256 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00078740 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00106725 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00072508 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00104124 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00104111 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00073574 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00078770 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00104112 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00078812 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00104122 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00104129 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00069083 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00077950 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00104123 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00073569 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00104107 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00112065 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00073573 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00104117 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00104118 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00112068 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00104133 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00112064 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00072510 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00104121 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00072509 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00104114 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00073567 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00112063 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00106598 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00073571 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00007728 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00098045 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00047473 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00104126 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00000057 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00104115 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00032340 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00104127 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00104116 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00104120 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00073570 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00073568 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00086781 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00116782 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00106271 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00104125 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00104130 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00104131 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00078797 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00073572 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00081317 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00104132 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00078702 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00025526 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00104113 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00094807 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00098119 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr2438 | ||||||||
Expr1027946 | |||||||||
Expr1032387 | |||||||||
Expr1151309 | |||||||||
Expr2015850 | |||||||||
Expr2034083 | |||||||||
Drives_construct | WBCnstr00010828 | ||||||||
WBCnstr00035374 | |||||||||
Construct_product | WBCnstr00010828 | ||||||||
WBCnstr00035374 | |||||||||
Regulate_expr_cluster | WBPaper00050332:skr-1(RNAi)-skr-2(RNAi)_downregulated | ||||||||
Antibody | WBAntibody00002336 | ||||||||
WBAntibody00002337 | |||||||||
Microarray_results (17) | |||||||||
Expression_cluster (146) | |||||||||
Interaction (260) | |||||||||
WBProcess | WBbiopr:00000068 | ||||||||
Map_info | Map | I | Position | 3.76667 | Error | 0.000462 | |||
Positive | Positive_clone | F46A9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference (22) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |