WormBase Tree Display for Gene: WBGene00004320
expand all nodes | collapse all nodes | view schema
WBGene00004320 | Evidence | Accession_evidence | EMBL | AB077287 | |||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | ZK287 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | rbx-1 | |||||||
Sequence_name | ZK287.5 | ||||||||
Molecular_name | ZK287.5 | ||||||||
ZK287.5.1 | |||||||||
CE06614 | |||||||||
Other_name | Ce-rbx-1 | Accession_evidence | EMBL | AB077287 | |||||
CELE_ZK287.5 | Accession_evidence | NDB | BX284605 | ||||||
Public_name | rbx-1 | ||||||||
DB_info | Database | AceView | gene | 5K170 | |||||
WormQTL | gene | WBGene00004320 | |||||||
WormFlux | gene | WBGene00004320 | |||||||
NDB | locus_tag | CELE_ZK287.5 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00004320|UniProtKB=Q23457 | |||||||
family | PTHR11210 | ||||||||
NCBI | gene | 179358 | |||||||
RefSeq | protein | NM_073095.8 | |||||||
SwissProt | UniProtAcc | Q23457 | |||||||
TREEFAM | TREEFAM_ID | TF105503 | |||||||
UniProt_GCRP | UniProtAcc | Q23457 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | rbx | ||||||||
Allele (14) | |||||||||
Strain | WBStrain00035875 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (23) | |||||||||
Ortholog (35) | |||||||||
Paralog | WBGene00000145 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
WBGene00019993 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | The rbx-1 gene encodes an ortholog of the mammalian RING box protein RBX1 (or ROC1), which interacts with several cullins and is a subunit of both the von Hippel-Lindau (VHL) tumor suppressor complex and of the SCF ubiquitin-ligase (E3) complex. | Paper_evidence (2) | ||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable cullin family protein binding activity and ubiquitin protein ligase activity. Involved in several processes, including negative regulation of intracellular signal transduction; positive regulation of metaphase/anaphase transition of meiotic cell cycle; and sister chromosome movement towards spindle pole involved in meiotic sister chromatid segregation. Part of Cul2-RING ubiquitin ligase complex. Expressed in germ line; gonad; linker cell; and oocyte. Is an ortholog of human RBX1 (ring-box 1). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | ZK287.5 | |||||||
Corresponding_transcript | ZK287.5.1 | ||||||||
Other_sequence (79) | |||||||||
Associated_feature | WBsf655582 | ||||||||
WBsf234258 | |||||||||
WBsf234259 | |||||||||
Experimental_info | RNAi_result | WBRNAi00072808 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00117323 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00084286 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00085628 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00075176 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00072809 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00076881 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00075179 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00098117 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00117325 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00092091 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00098116 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00059331 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00092095 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00117328 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00092088 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00098137 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00116003 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00117327 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00108578 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00115988 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00075183 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00117322 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00038255 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00075180 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00084871 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00063397 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00117329 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00081626 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00009463 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00086633 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00117321 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00075181 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00092087 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00117330 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00092086 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00117326 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00094802 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00108653 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00086631 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00117320 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00027066 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00075178 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00086632 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00063616 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00072807 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00092093 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00098059 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00075177 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00092090 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00108346 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00084285 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00086630 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00117319 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00108347 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00103659 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00092085 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00117324 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00075182 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr2794 | ||||||||
Expr2795 | |||||||||
Expr2887 | |||||||||
Expr12882 | |||||||||
Expr1012451 | |||||||||
Expr1032145 | |||||||||
Expr1162760 | |||||||||
Expr2015276 | |||||||||
Expr2033510 | |||||||||
Drives_construct | WBCnstr00023036 | ||||||||
WBCnstr00035565 | |||||||||
Construct_product | WBCnstr00035565 | ||||||||
Microarray_results (25) | |||||||||
Expression_cluster (125) | |||||||||
Interaction (133) | |||||||||
Map_info | Map | V | Position | 2.06847 | Error | 0.00086 | |||
Positive | Positive_clone | ZK287 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference (24) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |