WormBase Tree Display for Gene: WBGene00002058
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| WBGene00002058 | SMap | S_parent | Sequence | F25E2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | ifd-2 | |||||||
| Sequence_name | F25E2.4 | ||||||||
| Molecular_name | F25E2.4 | ||||||||
| F25E2.4.1 | |||||||||
| CE07133 | |||||||||
| Other_name | IF D2 | ||||||||
| CELE_F25E2.4 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | ifd-2 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:26 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ifd | ||||||||
| Allele (27) | |||||||||
| Strain | WBStrain00002946 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Ortholog (72) | |||||||||
| Paralog (12) | |||||||||
| Structured_description | Concise_description | ifd-2 encodes a nonessential intermediate filament protein; IFD-2 is predicted to function as a structural component of the cytoskeleton; IFD-2 has no obvious function in RNAi assays. | Paper_evidence | WBPaper00004761 | |||||
| WBPaper00005654 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in cellular localization; heterochromatin formation; and nucleus organization. Predicted to be located in nuclear envelope and nuclear lamina. Human ortholog(s) of this gene implicated in several diseases, including Alzheimer's disease; autoimmune disease (multiple); carcinoma (multiple); and intrinsic cardiomyopathy (multiple). Is an ortholog of several human genes including DES (desmin); GFAP (glial fibrillary acidic protein); and KRT7 (keratin 7). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0111658 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6462) | ||||
| DOID:421 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6458,HGNC:6463) | ||||||
| DOID:4252 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4235) | ||||||
| DOID:0050472 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6458,HGNC:6460,HGNC:6463) | ||||||
| DOID:0111556 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6427) | ||||||
| DOID:10652 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12692) | ||||||
| DOID:9351 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12692) | ||||||
| DOID:0050449 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6423,HGNC:6427) | ||||||
| DOID:0080251 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6460) | ||||||
| DOID:3748 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6445) | ||||||
| DOID:0080600 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4235) | ||||||
| DOID:12894 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12692) | ||||||
| DOID:3587 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6445) | ||||||
| DOID:13241 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12692) | ||||||
| DOID:0060193 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9461) | ||||||
| DOID:988 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2770) | ||||||
| DOID:1936 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12692) | ||||||
| DOID:0110431 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2770) | ||||||
| DOID:397 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2770) | ||||||
| DOID:0080092 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2770) | ||||||
| DOID:7148 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12692) | ||||||
| DOID:9074 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12692) | ||||||
| DOID:0111709 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6423) | ||||||
| DOID:799 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12692) | ||||||
| DOID:0050431 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2770) | ||||||
| DOID:4947 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6445) | ||||||
| DOID:2121 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6423,HGNC:6427) | ||||||
| DOID:12140 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12692) | ||||||
| DOID:0110248 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12692) | ||||||
| DOID:12930 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2770) | ||||||
| DOID:0111551 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2770) | ||||||
| DOID:5082 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6446) | ||||||
| DOID:3393 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12692) | ||||||
| DOID:1612 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6458) | ||||||
| Molecular_info | Corresponding_CDS | F25E2.4 | |||||||
| Corresponding_transcript | F25E2.4.1 | ||||||||
| Other_sequence | CR05859 | ||||||||
| CRC09035_1 | |||||||||
| Associated_feature | WBsf653667 | ||||||||
| WBsf670082 | |||||||||
| WBsf670083 | |||||||||
| WBsf236963 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00062660 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00013868 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00062655 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00112379 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00045498 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00031370 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00062656 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00007223 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr3397 | ||||||||
| Expr5854 | |||||||||
| Expr15264 | |||||||||
| Expr1019487 | |||||||||
| Expr1031211 | |||||||||
| Expr1149417 | |||||||||
| Expr2012684 | |||||||||
| Expr2030920 | |||||||||
| Drives_construct | WBCnstr00003452 | ||||||||
| WBCnstr00036486 | |||||||||
| WBCnstr00042145 | |||||||||
| Construct_product | WBCnstr00036486 | ||||||||
| WBCnstr00042145 | |||||||||
| Antibody | WBAntibody00000797 | ||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (248) | |||||||||
| Interaction (24) | |||||||||
| Map_info | Map | X | Position | -19.4996 | |||||
| Positive | Positive_clone | F25E2 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004761 | ||||||||
| WBPaper00027245 | |||||||||
| WBPaper00028945 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00056033 | |||||||||
| WBPaper00056896 | |||||||||
| WBPaper00057164 | |||||||||
| WBPaper00058256 | |||||||||
| WBPaper00058422 | |||||||||
| WBPaper00059330 | |||||||||
| WBPaper00063976 | |||||||||
| WBPaper00065558 | |||||||||
| WBPaper00065788 | |||||||||
| Remark | Sequence connection from [Karabinos A, Weber K]. krb 13/11/01 | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
