WormBase Tree Display for Gene: WBGene00018424

WBGene00018424 SMap: S_parent: Sequence: CHROMOSOME_V
  Identity: Version: 2
    Name: CGC_name: pgph-2 Person_evidence: WBPerson1352
      Sequence_name: F44E7.2
      Molecular_name: F44E7.2
        F44E7.2.1
        CE17072
        F44E7.2.2
      Other_name: CELE_F44E7.2 Accession_evidence: NDB BX284605
      Public_name: pgph-2
    DB_info: Database: AceView gene 5G251
        WormQTL gene WBGene00018424
        WormFlux gene WBGene00018424
        NDB locus_tag CELE_F44E7.2
        Panther gene CAEEL|WormBase=WBGene00018424|UniProtKB=O16247
          family PTHR19288
        NCBI gene 178965
        RefSeq protein NM_072111.7
        TrEMBL UniProtAcc O16247
        UniProt_GCRP UniProtAcc O16247
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:00 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 06 Aug 2018 15:31:57 WBPerson1983 Name_change: CGC_name: pgph-2
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pgph
    Allele (101)
    RNASeq_FPKM (74)
    GO_annotation: 00027569
      00027570
      00027571
      00027572
      00123574
    Ortholog (79)
    Paralog: WBGene00007548 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00016664 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00016892 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00019522 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00019604 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable phosphatase activity. Predicted to be located in cytoplasm. Is an ortholog of human PDXP (pyridoxal phosphatase) and PGP (phosphoglycolate phosphatase). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F44E7.2
    Corresponding_transcript: F44E7.2.1
      F44E7.2.2
    Other_sequence: BU086505.1
      BU087535.1
      GO238876.1
      GO238864.1
      BU089062.1
      CBC13986_1
      Oden_isotig15816
      Dviv_isotig08071
      GO238920.1
      BU086826.1
      FG588771.1
      GO238923.1
      Tcir_isotig14517
      FK810076.1
      FK805179.1
      CJC00235_2
      Name_isotig00693
      MP00781
      CBC06953_1
      GO238978.1
      GO238965.1
      BU666151.1
      MCC03653_1
      MC02068
      Dviv_isotig08070
      HBC13458_1
      JI471805.1
      Dviv_isotig08066
      Dviv_isotig08069
      GO239009.1
      GO238979.1
      JI166994.1
      Oden_isotig22302
      CJC00235_1
      Tcol_isotig06055
      Tcol_isotig06057
      MP02005
      GO238862.1
      Tcol_isotig06056
      NAC00406_1
      Name_isotig00694
      BU087888.1
      JI177747.1
      BU088795.1
      BU089141.1
      Dviv_isotig08067
      NAC01495_1
      Hbac_isotig01097
      BU088479.1
      Dviv_isotig08068
      BUC00647_1
      NAC00873_1
      EX915529.1
      BU086706.1
      BU086888.1
      GO238956.1
      CN477876.1
      BU666130.1
      MPC00797_1
    Associated_feature: WBsf646827
      WBsf1000083
      WBsf1000084
      WBsf1019685
      WBsf1019686
      WBsf231798
      WBsf231799
  Experimental_info: RNAi_result (11)
    Expr_pattern: Chronogram503
      Expr6071
      Expr1037939
      Expr1151155
      Expr2003721
      Expr2021940
    Drives_construct: WBCnstr00004029
      WBCnstr00026528
    Construct_product: WBCnstr00026528
    Regulate_expr_cluster: WBPaper00065926:pgph-2(overepxreesion)_upregulated
      WBPaper00065926:pgph-2(overepxreesion)_upregulated_glucose
    Microarray_results (18)
    Expression_cluster (193)
    Interaction (22)
  Map_info: Map: V Position: -1.00324
    Positive: Positive_clone: F44E7 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (5)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene