WormBase Tree Display for Gene: WBGene00018398
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| WBGene00018398 | SMap | S_parent | Sequence | F43H9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | sptl-2 | Person_evidence | WBPerson237 | |||||
| WBPerson3098 | |||||||||
| Sequence_name | F43H9.2 | ||||||||
| Molecular_name | F43H9.2a | ||||||||
| F43H9.2a.1 | |||||||||
| CE07246 | |||||||||
| F43H9.2b | |||||||||
| CE27380 | |||||||||
| F43H9.2b.1 | |||||||||
| F43H9.2b.2 | |||||||||
| Other_name | CELE_F43H9.2 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | sptl-2 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 06 May 2005 10:44:15 | WBPerson2970 | Name_change | CGC_name | sptl-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sptl | ||||||||
| Allele (62) | |||||||||
| Strain | WBStrain00037282 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Ortholog (41) | |||||||||
| Paralog | WBGene00011932 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00012007 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00016020 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable serine C-palmitoyltransferase activity. Predicted to be involved in ceramide biosynthetic process and sphingosine biosynthetic process. Predicted to be part of serine C-palmitoyltransferase complex. Human ortholog(s) of this gene implicated in hereditary sensory and autonomic neuropathy type 1C. Is an ortholog of human SPTLC2 (serine palmitoyltransferase long chain base subunit 2) and SPTLC3 (serine palmitoyltransferase long chain base subunit 3). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0070157 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11278) | ||||
| Molecular_info | Corresponding_CDS | F43H9.2a | |||||||
| F43H9.2b | |||||||||
| Corresponding_transcript (3) | |||||||||
| Other_sequence | AIC00149_1 | ||||||||
| EH005619.1 | |||||||||
| JI166186.1 | |||||||||
| MH01591 | |||||||||
| MHC01326_1 | |||||||||
| GW406665.1 | |||||||||
| Oden_isotig01555 | |||||||||
| Oden_isotig01549 | |||||||||
| BXC07438_1 | |||||||||
| Oden_isotig01559 | |||||||||
| Oden_isotig01553 | |||||||||
| Oden_isotig01552 | |||||||||
| Dviv_isotig17065 | |||||||||
| HGC04719_1 | |||||||||
| TS03191 | |||||||||
| TSC01813_1 | |||||||||
| Oden_isotig01556 | |||||||||
| PPC03150_1 | |||||||||
| Oden_isotig01551 | |||||||||
| Oden_isotig01563 | |||||||||
| Oden_isotig01566 | |||||||||
| Oden_isotig01560 | |||||||||
| CRC10923_1 | |||||||||
| GW411981.1 | |||||||||
| EY467186.1 | |||||||||
| JO472327.1 | |||||||||
| Oden_isotig01565 | |||||||||
| MAC00345_1 | |||||||||
| CRC12274_1 | |||||||||
| HG01756 | |||||||||
| ACC13114_1 | |||||||||
| Oden_isotig01562 | |||||||||
| Dviv_isotig28458 | |||||||||
| Oden_isotig24530 | |||||||||
| HCC05831_1 | |||||||||
| Oden_isotig01548 | |||||||||
| HGC08323_1 | |||||||||
| CR05388 | |||||||||
| Name_isotig06517 | |||||||||
| Oden_isotig01558 | |||||||||
| Name_isotig09182 | |||||||||
| HG02783 | |||||||||
| PSC01186_1 | |||||||||
| ACC04913_1 | |||||||||
| MA00893 | |||||||||
| Dviv_isotig17064 | |||||||||
| HC06509 | |||||||||
| Acan_isotig10419 | |||||||||
| PSC02142_1 | |||||||||
| Oden_isotig01554 | |||||||||
| MHC02297_1 | |||||||||
| Oden_isotig01557 | |||||||||
| MH05924 | |||||||||
| Oden_isotig01550 | |||||||||
| CR08269 | |||||||||
| Hbac_isotig03516 | |||||||||
| JI166382.1 | |||||||||
| Oden_isotig01561 | |||||||||
| Oden_isotig01564 | |||||||||
| Oden_isotig01567 | |||||||||
| EY466223.1 | |||||||||
| EY473402.1 | |||||||||
| Associated_feature | WBsf646978 | ||||||||
| WBsf718342 | |||||||||
| WBsf1000563 | |||||||||
| WBsf1000564 | |||||||||
| WBsf232045 | |||||||||
| WBsf232046 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00023229 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00024027 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00047230 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00032207 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00023741 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00047229 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00023465 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00014895 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1014380 | ||||||||
| Expr1037925 | |||||||||
| Expr1151089 | |||||||||
| Expr2016105 | |||||||||
| Expr2034340 | |||||||||
| Drives_construct | WBCnstr00026551 | ||||||||
| Construct_product | WBCnstr00016266 | ||||||||
| WBCnstr00026551 | |||||||||
| Microarray_results (30) | |||||||||
| Expression_cluster (241) | |||||||||
| Interaction (106) | |||||||||
| WBProcess | WBbiopr:00000137 | ||||||||
| Map_info | Map | V | Position | 1.00219 | Error | 0.000469 | |||
| Positive | Positive_clone | F43H9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00026204 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00040204 | |||||||||
| WBPaper00042257 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00056971 | |||||||||
| WBPaper00061178 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
