WormBase Tree Display for Gene: WBGene00016167
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| WBGene00016167 | SMap | S_parent | Sequence | C27F2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | vps-22 | Person_evidence | WBPerson3188 | |||||
| Sequence_name | C27F2.5 | ||||||||
| Molecular_name | C27F2.5 | ||||||||
| C27F2.5.1 | |||||||||
| CE26875 | |||||||||
| C27F2.5.2 | |||||||||
| Other_name | CELE_C27F2.5 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | vps-22 | ||||||||
| DB_info | Database | AceView | gene | 3G52+3G50 | |||||
| 3G50 | |||||||||
| WormQTL | gene | WBGene00016167 | |||||||
| WormFlux | gene | WBGene00016167 | |||||||
| NDB | locus_tag | CELE_C27F2.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00016167|UniProtKB=Q18258 | |||||||
| family | PTHR12806 | ||||||||
| NCBI | gene | 175672 | |||||||
| RefSeq | protein | NM_065651.8 | |||||||
| TREEFAM | TREEFAM_ID | TF105950 | |||||||
| TrEMBL | UniProtAcc | Q18258 | |||||||
| UniProt_GCRP | UniProtAcc | Q18258 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 26 Feb 2009 16:18:19 | WBPerson2970 | Name_change | CGC_name | vps-22 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | vps | ||||||||
| Allele (30) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (7) | |||||||||
| Contained_in_operon | CEOP3248 | ||||||||
| Ortholog (32) | |||||||||
| Structured_description | Concise_description | C27F2.5 encodes the C. elegans ortholog of the conserved vacuolar protein sorting protein EAP30/SNF8/VPS22; by homology, the product of C27F2.5 is predicted to be a component of an ESCRT-II complex (Endosomal Sorting Complex Required for Transport) that functions in endosomal transport. | Paper_evidence | WBPaper00026641 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 31 Jul 2007 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway. Predicted to be part of ESCRT II complex. Expressed in body wall musculature; pharyngeal muscle cell; pharynx; and vulval muscle. Is an ortholog of human SNF8 (SNF8 subunit of ESCRT-II). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C27F2.5 | |||||||
| Corresponding_CDS_history | C27F2.5a:wp135 | ||||||||
| C27F2.5b:wp135 | |||||||||
| Corresponding_transcript | C27F2.5.1 | ||||||||
| C27F2.5.2 | |||||||||
| Other_sequence | MC00157 | ||||||||
| HC08042 | |||||||||
| HC00898 | |||||||||
| Name_isotig08270 | |||||||||
| JI483076.1 | |||||||||
| HCC07918_2 | |||||||||
| Acan_isotig06833 | |||||||||
| Tcol_isotig21962 | |||||||||
| AYC00088_1 | |||||||||
| SRC06275_1 | |||||||||
| Oden_isotig09082 | |||||||||
| ES741177.1 | |||||||||
| MCC01045_1 | |||||||||
| SR04782 | |||||||||
| HBC06031_1 | |||||||||
| HC07933 | |||||||||
| Tcol_isotig04860 | |||||||||
| MHC01124_1 | |||||||||
| MCC00278_1 | |||||||||
| CJC00612_1 | |||||||||
| Dviv_isotig25153 | |||||||||
| NAC01384_1 | |||||||||
| RS10907 | |||||||||
| PPC06075_1 | |||||||||
| Tcol_isotig04859 | |||||||||
| MC00762 | |||||||||
| PPC14188_1 | |||||||||
| CR07214 | |||||||||
| JI170277.1 | |||||||||
| BMC12063_1 | |||||||||
| MH03803 | |||||||||
| Oden_isotig09084 | |||||||||
| BU086662.1 | |||||||||
| FC819974.1 | |||||||||
| HC01042 | |||||||||
| HCC07918_1 | |||||||||
| Oden_isotig09081 | |||||||||
| SSC00212_1 | |||||||||
| Tcir_isotig07794 | |||||||||
| Name_isotig01665 | |||||||||
| SS01377 | |||||||||
| FD515598.1 | |||||||||
| CSC01950_1 | |||||||||
| RSC01396_1 | |||||||||
| Acan_isotig06834 | |||||||||
| AE01780 | |||||||||
| CJC04021_1 | |||||||||
| Tcol_isotig04858 | |||||||||
| BMC07617_1 | |||||||||
| JI478630.1 | |||||||||
| Hbac_isotig03391 | |||||||||
| Oden_isotig09083 | |||||||||
| PT01166 | |||||||||
| CBC04537_1 | |||||||||
| Associated_feature | WBsf651025 | ||||||||
| WBsf226616 | |||||||||
| Experimental_info | RNAi_result (17) | ||||||||
| Expr_pattern | Expr12774 | ||||||||
| Expr12778 | |||||||||
| Expr15896 | |||||||||
| Expr1013359 | |||||||||
| Expr1036920 | |||||||||
| Expr1145400 | |||||||||
| Expr2018014 | |||||||||
| Expr2036151 | |||||||||
| Drives_construct | WBCnstr00022878 | ||||||||
| WBCnstr00028279 | |||||||||
| WBCnstr00042586 | |||||||||
| Construct_product | WBCnstr00022878 | ||||||||
| WBCnstr00028279 | |||||||||
| WBCnstr00042586 | |||||||||
| Microarray_results (34) | |||||||||
| Expression_cluster (77) | |||||||||
| Interaction (48) | |||||||||
| Map_info | Map | III | Position | -2.30024 | Error | 0.00462 | |||
| Positive | Positive_clone | C27F2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00026641 | ||||||||
| WBPaper00038372 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00040674 | |||||||||
| WBPaper00043249 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064934 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
