WormBase Tree Display for Gene: WBGene00004807

WBGene00004807 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: CHROMOSOME_I
  Identity: Version: 1
    Name: CGC_name: skr-1 Person_evidence: WBPerson322
      Sequence_name: F46A9.5
      Molecular_name: F46A9.5
        F46A9.5.1
        CE10580
      Other_name: CELE_F46A9.5 Accession_evidence: NDB BX284601
      Public_name: skr-1
    DB_info: Database: AceView gene 1K49
        WormQTL gene WBGene00004807
        WormFlux gene WBGene00004807
        NDB locus_tag CELE_F46A9.5
        Panther gene CAEEL|WormBase=WBGene00004807|UniProtKB=G5ECU1
          family PTHR11165
        NCBI gene 172775
        RefSeq protein NM_060112.8
        SwissProt UniProtAcc G5ECU1
        TREEFAM TREEFAM_ID TF354233
        UniProt_GCRP UniProtAcc G5ECU1
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:36 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: skr
    Allele (14)
    Strain: WBStrain00036440
      WBStrain00005195
    RNASeq_FPKM (74)
    GO_annotation (32)
    Ortholog (44)
    Paralog (19)
    Structured_description: Concise_description: The skr-1 gene encodes a homolog of Skp1 in S. cerevisiae that is required for the restraint of cell proliferation, progression through the pachytene stage of meiosis, and the formation of bivalent chromosomes at diakinesis. Paper_evidence (2)
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable cullin family protein binding activity. Involved in several processes, including negative regulation of intracellular signal transduction; regulation of cellular component organization; and regulation of protein stability. Predicted to be located in cytoplasm and nucleus. Expressed in several structures, including pharynx and spermatheca. Is an ortholog of human SKP1 (S-phase kinase associated protein 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F46A9.5
    Corresponding_transcript: F46A9.5.1
    Other_sequence: Tcir_isotig06955
      Tcir_isotig17220
      ACC09241_1
      FG354098.1
      Tcol_isotig04656
      CR09368
      EX007616.1
      Dviv_isotig16664
      HC07979
      CRC00017_1
      GRC01217_1
      HG03048
      GO249941.1
      JO470312.1
      TS01271
      MPC01723_1
      CJC02654_1
      MH02037
      JK314964.1
      BMC02432_1
      EX006973.1
      Dviv_isotig06545
      ES743235.1
      TS00847
      DA03771
      EX559751.1
      MP02181
      CBC12872_1
      FG348643.1
      FE919392.1
      XIC03816_1
      EX500333.1
      Tcol_isotig14353
      CGC00521_1
      MI06215
      ES570566.1
      AW257622.1
      FC809880.1
      ACC02165_1
      PPC15161_1
      BE202285.1
      BUC01036_1
      FG580823.1
      Acan_isotig12556
      FC542129.1
      Oden_isotig22015
      Acan_isotig13123
      TSC07334_1
      JI165286.1
      Dviv_isotig16665
      ASC03820_1
      CBC15349_1
      TSC02716_1
      TSC03347_1
      MIC05985_1
      RSC01462_1
      Oden_isotig22082
      DA04891
      PPC05063_1
      FC815240.1
      Dviv_isotig06544
      GR11066
      Tcol_isotig10704
      FG587661.1
      JI176532.1
      OOC03201_1
      PPC10156_1
      ES408712.1
      EX499797.1
      MHC05355_1
      FC539079.1
      AYC03152_1
      XI03962
      JI170124.1
      EX013395.1
      BU087860.1
      SRC01755_1
      AI130334.1
      TS04419
      Dviv_isotig06542
      JI173215.1
      EX015302.1
      AE04244
      EX915095.1
      CBC14776_1
      EX013575.1
      EX009883.1
      FG583826.1
      OVC01787_1
      HGC00175_1
      EX007414.1
      HC07992
      FE914641.1
      Tcol_isotig10703
      PPC07897_1
      EX013384.1
      ES739353.1
      JO469880.1
      Oden_isotig12379
      Dviv_isotig06543
      NAC01944_1
      FG587275.1
      EX554337.1
      CBC00397_1
      SSC00100_1
      Tcir_isotig19151
      ASC33764_1
      FE918681.1
      CR02776
      Acan_isotig12811
      Name_isotig02455
      EX008817.1
      Hbac_isotig04294
      Dviv_isotig32727
      HCC08004_1
      SR00448
      RS08539
      CN478253.1
      Acan_isotig12465
      ES408574.1
      FC549591.1
      EX010875.1
      Oden_isotig12377
      AE01053
      EX010412.1
      EX913340.1
      MC00629
      ES411820.1
      ES408757.1
      Hbac_isotig03046
      HBC01772_1
      PP00260
      JI179334.1
      EX013473.1
      EX551771.1
      HGC10534_1
      ACC01823_1
      BXC03169_1
      RS08158
      HBC00862_1
      SS01425
      DAC00146_1
      CJC03081_1
      Oden_isotig12378
    Associated_feature: WBsf643588
      WBsf643589
      WBsf656751
      WBsf656752
      WBsf984704
      WBsf218286
      WBsf218287
      WBsf218288
      WBsf218289
  Experimental_info: RNAi_result (53)
    Expr_pattern: Expr2437
      Expr13172
      Expr1013389
      Expr1032386
      Expr1151310
      Expr2015847
      Expr2034080
    Drives_construct: WBCnstr00010827
      WBCnstr00035375
    Construct_product: WBCnstr00010827
      WBCnstr00035375
      WBCnstr00039337
    Regulate_expr_cluster: WBPaper00050332:skr-1(RNAi)-skr-2(RNAi)_downregulated
    Antibody: WBAntibody00002336
      WBAntibody00002337
    Microarray_results (24)
    Expression_cluster (98)
    Interaction (235)
    WBProcess: WBbiopr:00000068
  Map_info: Map: I Position: 3.76789 Error: 0.000506
    Positive: Positive_clone: F46A9 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (31)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene