WormBase Tree Display for Gene: WBGene00004498

WBGene00004498 SMap: S_parent: Sequence: B0412
  Identity: Version: 1
    Name: CGC_name: rps-29
      Sequence_name: B0412.4
      Molecular_name: B0412.4
        B0412.4.1
        CE26849
      Other_name: CELE_B0412.4 Accession_evidence: NDB BX284603
      Public_name: rps-29
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:35 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rps
    Allele (14)
    Legacy_information: Orthologous to yeast (S.cerevisiae) ribosomal protein rps29 using blastP
    Strain: WBStrain00002343
    RNASeq_FPKM (74)
    GO_annotation: 00049653
      00049654
      00049655
      00049656
      00049657
      00049658
      00113037
      00113038
      00113039
      00113040
    Contained_in_operon: CEOP3036
    Ortholog (21)
    Structured_description: Concise_description: rps-29 encodes a small ribosomal subunit S29 protein; by homology, RPS-29 is predicted to function in protein biosynthesis; in C. elegans, RPS-29 activity is broadly required for embryonic and germline development, normal body coloration and morphology, normal postembryonic growth rates, and the overall health of the animal. Paper_evidence: WBPaper00004403
            WBPaper00005654
          Curator_confirmed: WBPerson1843
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable zinc ion binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 13. Is an ortholog of human RPS29 (ribosomal protein S29). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0111889 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:10419)
  Molecular_info: Corresponding_CDS: B0412.4
    Corresponding_transcript: B0412.4.1
    Other_sequence: AS10683
      HC07570
      AS13937
      NB08379
      AS17333
      CB043112.1
      SR03483
      GR977393.1
      ASC13590_2
      AS13617
      HC04881
      NB08147
      AS17264
      AS17124
      CB043763.1
      AS10540
      AS13938
      Acan_isotig03164
      SC00352
      JI472833.1
      HG10599
      BU666871.1
      HC02690
      HC09630
      GR978541.1
      Dviv_isotig33912
      ES414150.1
      HCC02811_1
      AE04870
      AS13792
      AS16630
      HC02934
      HC02984
      CD203623.1
      OVC00228_1
      CB043625.1
      AS17137
      HC04367
      GPC00622_1
      GR979023.1
      HC03697
      HG01531
      PPC01574_1
      HGC00381_1
      FE919734.1
      BU088746.1
      FE918309.1
      AS17351
      SS00493
      GR979006.1
      XIC00878_1
      AYC00332_1
      HG05844
      JO475686.1
      CD203046.1
      PPC11139_1
      ALC00237_1
      HC04425
      ASC37771_1
      DI00437
      GR978509.1
      GR978429.1
      HCC09394_1
      AS11597
      AS05124
      PT04182
      AS16701
      NB08015
      CB043091.1
      AS17217
      Tcir_isotig31085
      CK850627.1
      NB09468
      PT03823
      AS15419
      HG11035
      SRC08791_1
      AS17332
      GR978800.1
      FC821573.1
      HC04918
      AS13221
      Tcir_isotig07825
      PTC03251_1
      AS17081
      AI151666.1
      FE911109.1
      SSC01226_1
      BU666475.1
      AS14090
      FC820944.1
      EX008275.1
      SRC00031_1
      NB08780
      AS17082
      CB043043.1
      HCC13194_1
      HC07298
      HG02679
      CRC00094_1
      TX02009
      AS16702
      TDC00042_1
      FE914372.1
      RS09135
      PT03887
      FE920044.1
      AS13094
      AS13571
      AS03565
      Acan_isotig15248
      CR06292
      AS03778
      AS11126
      Name_isotig09185
      AS17234
      NBC00398_1
      HG06150
      FE912085.1
      FE918042.1
      ES742837.1
      EG025481.1
      CB043637.1
      FC821836.1
      NB08962
      EX011863.1
      SR03549
      FC821774.1
      PT03899
      DN557540.1
      AS12930
      TX02023
      JI462025.1
      PP00377
      NB08805
      CB043457.1
      GR977373.1
      CJC00116_1
      HC09810
      HG05894
      ASC26592_1
      GR12179
      RS10300
      HC03646
      Tcol_isotig13559
      PEC00244_1
      EX008146.1
      FC820898.1
      DIC01562_1
      CB043510.1
      HCC02811_2
      HG05874
      HC03522
      PT03770
      AS17012
      AI308631.1
      HG06238
      FC821160.1
      HG05858
      HC09394
      HG06285
      HG06330
      Acan_isotig03165
      GR18251
      AS10554
      HC04767
      AS13869
      CBC16287_1
      ASC13590_1
      NB08863
      HC00205
      HC03669
      CB042941.1
      AS16668
      CB043496.1
      HBC02486_1
      EX911511.1
      HG06099
      FC821159.1
      ES741861.1
      FE918506.1
      HG06221
      Acan_isotig19724
      XI01900
      TX02074
      AS16879
      EX010028.1
      RS11353
      WBC01957_1
      FE905417.1
      HC02989
      DN557535.1
      GO252889.1
      FE910803.1
      HGC01930_1
      Hbac_isotig07542
      Tcir_isotig26921
      SC01421
      HCC00670_1
      CBC14439_1
      HG06206
      BU087962.1
      GR978721.1
      FC821510.1
      AS13856
      PPC04843_1
      AS13961
      HC03781
      CB043621.1
      CRC02172_1
      NAC00246_1
      CJC17723_1
      LSC00682_1
      AS13951
      FC820879.1
      CB043544.1
      EX914943.1
      AS16950
      AS11613
      NB09921
      ES744078.1
      HBC02851_1
      HS01578
      AS16902
      Oden_isotig18393
      NB09987
      HC04475
      HC04355
      NB06745
      AS13804
      AS13715
      NB09659
      AS17298
      AS17411
      GRC00966_1
      GR13262
      AS16818
      NB09025
      GR977914.1
      SR04192
      HC04892
      CSC00695_1
      HC04364
      TX01985
      NB08867
      AS11773
      AS16720
      CB043777.1
      CB035449.1
      GR979037.1
      EX007093.1
      CBC02734_1
      GR977538.1
      RS11354
      BM517360.1
      FE919502.1
      GR18250
      AS14145
      FE918754.1
      OVC03890
      AS13849
      RS06887
      AS13870
      AS17208
      CJC16992_1
      NB09459
      HC03812
      CJC04502
      CBC02743_1
      HC07273
      GR977922.1
      AS13827
      OOC03036_1
      HCC00670_2
      Acan_isotig03166
      ACC03399_1
      GP00141
      AS16762
      ASC28231_1
      AS16708
      FC821226.1
      RSC00397_1
      HG10925
      AE01518
      AS14080
      HC03472
      BU088954.1
      FD516547.1
      HC08021
      JI478476.1
      ES741342.1
      HC04366
      GR17969
      HC01173
      CB043029.1
      ES412083.1
      AA901428.1
      FE911411.1
      AS16899
      FC821773.1
      CB043712.1
      TCC00433_1
      NBC05108_1
      PE00476
      FE919733.1
      EX014064.1
      HG05938
      AS11647
      HSC01634_1
      AS16781
      GO239319.1
      NB08888
      BMC00288_1
      CBC15631_1
      BU585687.1
      CJC02043_1
      AS13736
      FC821528.1
      AS11216
      FE918230.1
      BM517298.1
      EX012648.1
      AS16717
      HG06355
      HC04376
      ES410089.1
      GR979268.1
    Associated_feature: WBsf644926
      WBsf991160
      WBsf224396
      WBsf224397
  Experimental_info: RNAi_result (27)
    Expr_pattern: Chronogram1269
      Expr5067
      Expr1023586
      Expr1032301
      Expr1143196
      Expr2015524
      Expr2033759
    Drives_construct: WBCnstr00003012
    Microarray_results (21)
    Expression_cluster (142)
    Interaction (157)
  Map_info: Map: III Position: -25.9426 Error: 0.030105
    Positive: Positive_clone: B0412 Inferred_automatically (2)
    Pseudo_map_position
  Reference: WBPaper00010022
    WBPaper00024230
    WBPaper00028564
    WBPaper00035215
    WBPaper00036019
    WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene