WormBase Tree Display for Gene: WBGene00004490

WBGene00004490 SMap: S_parent: Sequence: F37C12
  Identity: Version: 1
    Name: CGC_name: rps-21
      Sequence_name: F37C12.11
      Molecular_name: F37C12.11
        F37C12.11.1
        CE30779
      Other_name: CELE_F37C12.11 Accession_evidence: NDB BX284603
      Public_name: rps-21
    DB_info: Database: AceView gene 3I278
        WormQTL gene WBGene00004490
        WormFlux gene WBGene00004490
        NDB locus_tag CELE_F37C12.11
        Panther gene CAEEL|WormBase=WBGene00004490|UniProtKB=P49197
          family PTHR10442
        NCBI gene 176011
        RefSeq protein NM_066178.10
        SwissProt UniProtAcc P49197
        TREEFAM TREEFAM_ID TF300167
        UniProt_GCRP UniProtAcc P49197
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:35 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rps
    Allele: WBVar01500260
      WBVar01645365
      WBVar01499774
      WBVar01825495
      WBVar01499237
      WBVar02053330
      WBVar00837914
      WBVar00837915
      WBVar00837916
      WBVar00401240
    Legacy_information: Orthologous to yeast (S.cerevisiae) ribosomal protein rps21 using blastP
    RNASeq_FPKM (74)
    GO_annotation (15)
    Ortholog (35)
    Structured_description: Concise_description: rps-21 encodes a small ribosomal subunit S21 protein; by homology, RPS-21 is predicted to function in protein biosynthesis; in C. elegans, RPS-21 activity is required for embryonic and germline development, as well as the overall health of the animal. Paper_evidence: WBPaper00004403
            WBPaper00005654
          Curator_confirmed: WBPerson1843
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to be a structural constituent of ribosome. Predicted to be involved in endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) and endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be located in cytosol; ribosome; and rough endoplasmic reticulum. Predicted to be part of cytosolic small ribosomal subunit. Is an ortholog of human RPS21 (ribosomal protein S21). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F37C12.11
    Corresponding_transcript: F37C12.11.1
    Other_sequence: AE00501
      EX910467.1
      FC821468.1
      GW407304.1
      N21809.1
      FC821772.1
      PTC01202_1
      Oden_isotig10756
      HC07909
      EF634927.1
      Acan_isotig00019
      AS13610
      PPC00645_1
      HC08313
      HC02110
      Tcol_isotig21932
      PT03741
      HC08358
      EF634915.1
      AS16811
      HCC04970_1
      BU088348.1
      AS08484
      DI00424
      FC821957.1
      EF634922.1
      HC07417
      AS13108
      BU086620.1
      EX912799.1
      EF634918.1
      SS00814
      ES412688.1
      CB036803.1
      HC07858
      EX912913.1
      NB09623
      ES410628.1
      BU088454.1
      Dviv_isotig16121
      HC08003
      EF634929.1
      AS02877
      FE919802.1
      FD515791.1
      AI438397.1
      BXC02666_1
      GW411987.1
      EX011135.1
      HC08204
      HC07422
      NB07153
      HC07263
      HC08249
      CRC00468_1
      AS11616
      HC03043
      EX014967.1
      GRC03883_1
      HC03602
      FC820826.1
      HC08292
      AS11756
      TCC02092_1
      RSC00067_1
      SR00783
      TX00229
      HC07594
      EX013868.1
      CJC08254_1
      PP00561
      FE913432.1
      HCC09397_1
      ES412815.1
      HC07744
      EX013735.1
      GR17342
      NB09709
      FE912936.1
      HC08254
      CR12249
      HBC01896_1
      HC07300
      HC00185
      NBC00820_1
      EF634924.1
      MC05018
      NBC05947_1
      AS17381
      EX013541.1
      HCC00787_3
      AS16754
      EX911502.1
      GO249120.1
      HC08127
      HC00114
      WBC01680_1
      FC821341.1
      HC07363
      HC07154
      JO475654.1
      HCC05584_1
      AS07598
      AS17153
      Name_isotig08817
      GR10086
      EX014538.1
      GO249724.1
      GR15372
      HCC05644_1
      HC00190
      JI222003.1
      HBC12293_1
      EF634928.1
      BU088783.1
      PT04023
      ES409679.1
      TDC00117_1
      HCC00787_2
      TMC00888_1
      EX910488.1
      HC07375
      EX916695.1
      HC02060
      CB043656.1
      AS16949
      AS16771
      FC821158.1
      Tcir_isotig05627
      AI540014.1
      AS08024
      EX912006.1
      EF634921.1
      FE919065.1
      HC08173
      HC00244
      HC04069
      AI665844.1
      AS17176
      EF634919.1
      GRC00567_2
      HC03067
      FE920078.1
      GR11107
      HC04470
      AI438226.1
      AW519330.1
      XI00270
      HC08033
      EF634913.1
      EX910464.1
      Tcir_isotig16503
      XIC00028_1
      HC07735
      HC07822
      HC07661
      HC07761
      HCC00784_1
      AS17196
      BMC00282_1
      ALC00671_1
      FE910874.1
      CJC00646_1
      Tcir_isotig12226
      HC00902
      HC04893
      HC01425
      HC00878
      BF599239.1
      FG619705.1
      EX009440.1
      HC08203
      EF634912.1
      HC05054
      HC02141
      PT01796
      GR17798
      HCC00787_1
      AS11260
      PT03935
      EF634914.1
      AYC00663_1
      HC07290
      EF634925.1
      NB09621
      BMC11693_1
      PTC03503_1
      EF634917.1
      SRC00049_1
      CK850493.1
      HC07398
      NB09950
      CSC01714_1
      HBC11404_1
      HC07301
      HC00107
      ASC21866_1
      HCC05644_2
      EF634923.1
      Dviv_isotig16120
      AS03925
      AS17061
      CB043141.1
      BG467742.1
      EF634920.1
      CD203275.1
      GR17797
      Tcir_isotig16802
      PSC01198_2
      ES408727.1
      EL889686.1
      AS16963
      HC01961
      NB08453
      HC04742
      EX013518.1
      EF634926.1
      EF634916.1
      EX915020.1
      HC03394
      FG580811.1
      AS11404
      CK850180.1
      HC00256
      BM536446.1
      NB09622
      PVC03376_1
      AS07595
      AS14901
      HC07544
      HC08291
      ACC02115_1
      AS17023
      HC07722
      EY459830.1
      HC07782
      OOC03689_1
      GRC00567_1
      GO249849.1
      AS10739
      HC00207
      FC820935.1
      CBC10315_1
      AS13783
      HC02547
      HC07847
      HC07520
      FE910167.1
      NAC00486_1
      HC07383
      WBC01880_1
      BG310579.1
      DIC01468_1
      BF400439.1
      ES408469.1
      HC04755
      ES409920.1
      HCC04970_2
      OVC02778_1
      CR02399
      HC07356
      TM01285
      SR03113
      AS16794
      FE915833.1
      GR11772
      LSC01479_1
      AS04858
      FG584330.1
      CBC02700_1
      BE491841.1
      BU586460.1
      PT03744
      HC07404
      FC821563.1
      FE918938.1
      EX007619.1
      HC00149
      HC08118
      BG310557.1
      CBC01897_1
      AS06516
      HC07482
      SSC02029_1
      Tcir_isotig05626
    Associated_feature (6)
  Experimental_info: RNAi_result (29)
    Expr_pattern: Chronogram728
      Chronogram1946
      Expr5980
      Expr1011153
      Expr1032293
      Expr1150488
      Expr2015516
      Expr2033751
    Drives_construct: WBCnstr00003591
      WBCnstr00035445
    Construct_product: WBCnstr00035445
    Microarray_results (21)
    Expression_cluster (167)
    Interaction (260)
  Map_info: Map: III Position: -0.775211 Error: 0.000213
    Positive: Positive_clone: F37C12 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00028564
    WBPaper00033090
    WBPaper00035215
    WBPaper00035286
    WBPaper00038491
    WBPaper00049828
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene