WormBase Tree Display for Gene: WBGene00004481

WBGene00004481 SMap: S_parent: Sequence: F54E7
  Identity: Version: 1
    Name: CGC_name: rps-12
      Sequence_name: F54E7.2
      Molecular_name: F54E7.2
        F54E7.2.1
        CE26896
        F54E7.2.2
        F54E7.2.3
        F54E7.2.4
      Other_name: CELE_F54E7.2 Accession_evidence: NDB BX284603
      Public_name: rps-12
    DB_info: Database: AceView gene 3G769
        WormQTL gene WBGene00004481
        WormFlux gene WBGene00004481
        NDB locus_tag CELE_F54E7.2
        Panther gene CAEEL|WormBase=WBGene00004481|UniProtKB=P49196
          family PTHR11843
        NCBI gene 175786
        RefSeq protein NM_065820.8
        SwissProt UniProtAcc P49196
        TREEFAM TREEFAM_ID TF300196
        UniProt_GCRP UniProtAcc P49196
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:35 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rps
    Allele (21)
    Legacy_information: Orthologous to yeast (S.cerevisiae) ribosomal protein rps12 using blastP
    RNASeq_FPKM (72)
    GO_annotation (11)
    Contained_in_operon: CEOP3316
    Ortholog (39)
    Structured_description: Concise_description: rps-12 encodes a small ribosomal subunit S12 protein; by homology, RPS-12 is predicted to function in protein biosynthesis; in C. elegans, RPS-12 activity is required for embryonic and germline development, normal movement, and the overall health of the animal. Paper_evidence: WBPaper00004403
            WBPaper00005654
          Curator_confirmed: WBPerson1843
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to be a structural constituent of ribosome. Predicted to be involved in ribosomal small subunit biogenesis. Predicted to be located in nucleolus and ribosome. Predicted to be part of cytosolic small ribosomal subunit and small-subunit processome. Is an ortholog of human RPS12 (ribosomal protein S12). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F54E7.2
    Corresponding_transcript: F54E7.2.1
      F54E7.2.2
      F54E7.2.3
      F54E7.2.4
    Other_sequence: CD203424.1
      CR02778
      XI00298
      GPC03074_1
      EX565143.1
      ASC17431_1
      Hbac_isotig00252
      FC820911.1
      Acan_isotig21830
      SRC00077_1
      Acan_isotig15730
      GR11802
      NB08763
      EX912097.1
      PT00354
      EX011387.1
      EX557049.1
      Tcol_isotig05889
      Acan_isotig06816
      EX915185.1
      CR11703
      FC821496.1
      ASC05540_1
      Tcol_isotig05890
      TDC03169_1
      AS12777
      HC02340
      RS07281
      Tcir_isotig00967
      AS11403
      AS14964
      ES413591.1
      HC02543
      GW412688.1
      AS02592
      HBC12311_1
      NB07737
      GO250436.1
      TCC00459_1
      AE01358
      GO249005.1
      DN557701.1
      DN557433.1
      AS08141
      ES744485.1
      EX914293.1
      LSC00107_1
      EX012528.1
      GRC04366_1
      NB08318
      BG467859.1
      AS12851
      TX01831
      BMC00188_1
      TLC00237_1
      DN190752.1
      CD203457.1
      PEC00474_1
      AS12544
      ES413560.1
      AW288201.1
      NBC00847_1
      EX009250.1
      AS06238
      DN556712.1
      BXC02541_1
      ES880322.1
      GPC00590_1
      XIC00670_1
      CJC13657_1
      FE918723.1
      CB043512.1
      ES743659.1
      EX916662.1
      CD455315.1
      ASC24171_1
      ES741816.1
      CD374768.1
      ES742898.1
      HBC00184_1
      AAC00007_1
      ACC30074_1
      AS11550
      AS09505
      Tcir_isotig00966
      WBC00587_2
      BU586655.1
      BM517234.1
      BU666797.1
      BMC12231_1
      BU585418.1
      JI235326.1
      Dviv_isotig21813
      ACC03791_1
      CGC00628_1
      XI03622
      Name_isotig08297
      FE916410.1
      EX910041.1
      AS12447
      ACC06455_1
      AW257729.1
      AS12105
      AE00929
      OOC03138_1
      ES742647.1
      BE132579.1
      AI132824.1
      CRC02095_1
      HG10853
      FE910704.1
      DN557129.1
      DN190367.1
      FE919105.1
      GW408479.1
      BMC12233_1
      DN190565.1
      JI221518.1
      FD516760.1
      Acan_isotig06815
      EX916148.1
      AW208364.1
      CR10223
      CB043796.1
      GR978940.1
      PP00563
      AS10890
      ZPC00134_1
      BM536476.1
      PPC04800_1
      DIC00993_1
      ES412604.1
      AA756858.1
      CD374709.1
      EX560132.1
      CJC11398_1
      DN191351.1
      SSC00890_1
      PT04278
      CK850210.1
      Acan_isotig22543
      AYC00397_2
      DAC00623_1
      PT00020
      EX008381.1
      RSC00280_1
      GO249989.1
      OVC00095_1
      NAC00568_1
      AS01937
      SS01488
      FE918491.1
      TX00478
      AI692151.1
      EX007932.1
      TCC02202_1
      BG809038.1
      DN557372.1
      ES408903.1
      FC821793.1
      BE132487.1
      AS03154
      FE908460.1
      DIC00120_1
      AM743583.1
      SR00982
      FC821182.1
      JO471519.1
      AS14072
      DA05466
      ACC00222_1
      PSC01824
      ES410481.1
      BU089169.1
      ZP00195
      ALC01108_1
      Tcir_isotig09326
      Dviv_isotig21812
      CRC08488_1
      PTC03499_1
      DA00254
      EX913333.1
      ES410848.1
      AI363660.1
      DI00520
      ES743891.1
      HC04788
      JO474803.1
      HCC00686_1
      ES742589.1
      CK850599.1
      DN557890.1
      PT04277
      FE920155.1
      WBC00587_1
      JI220982.1
      Name_isotig08834
      EX912647.1
      ES412240.1
      AYC00397_1
      EX913800.1
      PT00009
      EX007332.1
      AS13134
      CB036613.1
      ES740327.1
      CBC15319_1
      EX012381.1
      PE00579
      CRC00901_1
      HCC12613_1
      PPC00688_1
      CB043750.1
      FE919465.1
      AA901453.1
      GT571546.1
      AE03536
      CR10399
      HGC01909_1
      ES742332.1
      CK850301.1
      CD455523.1
      ES413526.1
      DI00455
      CK850273.1
      EX912676.1
      XIC00650_1
      JI182183.1
      BE202284.1
      FG619778.1
      ASC02834_1
      DN556690.1
      CBC00540_1
      SC01169
      FE919876.1
      Oden_isotig24147
      CB043617.1
      CR09694
      GP00133
      CJC00078_1
      ASC00459_1
      FC820863.1
      FC821795.1
      BUC00916_1
      BU087589.1
      ES743702.1
      GO251683.1
      TDC00027_1
      DN557605.1
      FE911475.1
      FE912369.1
      ES741226.1
      CRC07950_1
      Tcir_isotig00968
      CK855283.1
      ES412562.1
      EX011584.1
      CSC01749_1
      EX912542.1
      Tcol_isotig05891
      EX557137.1
    Associated_feature: WBsf645194
      WBsf645195
      WBsf658981
      WBsf981484
      WBsf1014935
      WBsf224977
  Experimental_info: RNAi_result (21)
    Expr_pattern (5)
    Drives_construct: WBCnstr00035452
    Construct_product: WBCnstr00035452
    Microarray_results (20)
    Expression_cluster (178)
    Interaction (178)
  Map_info: Map: III Position: -1.45858 Error: 0.000827
    Positive: Positive_clone: F54E7 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00024230
    WBPaper00028564
    WBPaper00029197
    WBPaper00038356
    WBPaper00038491
    WBPaper00049828
    WBPaper00055090
    WBPaper00065012
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene