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WormBase Tree Display for Gene: WBGene00004420

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Name Class

WBGene00004420SMapS_parentSequenceR13A5
IdentityVersion1
NameCGC_namerpl-9
Sequence_nameR13A5.8
Molecular_nameR13A5.8
R13A5.8.1
CE01380
Other_nameCELE_R13A5.8Accession_evidenceNDBBX284603
Public_namerpl-9
DB_infoDatabaseAceViewgene3I662
WormQTLgeneWBGene00004420
WormFluxgeneWBGene00004420
NDBlocus_tagCELE_R13A5.8
PanthergeneCAEEL|WormBase=WBGene00004420|UniProtKB=Q95Y90
familyPTHR11655
NCBIgene176071
RefSeqproteinNM_001382918.2
SwissProtUniProtAccQ95Y90
TREEFAMTREEFAM_IDTF300033
UniProt_GCRPUniProtAccQ95Y90
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:35WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classrpl
Allele (11)
Legacy_informationOrthologous to yeast (S.cerevisiae) ribosomal protein rpl9 using blastP
RNASeq_FPKM (74)
GO_annotation00089791
00089792
00089793
00089794
00089795
00089796
00112820
00112821
00112822
00112823
Ortholog (43)
Structured_descriptionConcise_descriptionrpl-9 encodes a large ribosomal subunit L9 protein that affects fertility and embryonic viability.Paper_evidenceWBPaper00004403
WBPaper00005654
Curator_confirmedWBPerson48
WBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to be a structural constituent of ribosome. Involved in determination of adult lifespan. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Expressed in intestine and tail. Is an ortholog of human RPL9 (ribosomal protein L9).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSR13A5.8
Corresponding_transcriptR13A5.8.1
Other_sequenceGW407685.1
ASC17441_1
Dviv_isotig10751
RSC00205_1
PTC00590_1
DI01998
PTC03320_1
Tcir_isotig09024
CBC00563_1
GR977547.1
GO253172.1
ASC24236_1
EX911221.1
GR11948
ES743919.1
BU089163.1
AS17114
ES411973.1
MC05114
ES413443.1
GR17932
HG10600
PPC00101_1
TS00852
GO252149.1
EX912843.1
ES570041.1
NBC00174_1
HCC00042_1
PP00616
WBC01586_1
JK315407.1
BU086796.1
CR06811
FF679534.1
EX008580.1
FE916495.1
EX015175.1
EX501882.1
MH06646
EX011578.1
EX911523.1
GR14650
GQ422176.1
ACC02353_1
AS12701
GR19406
HBC24549_1
OOC03263_1
EX013339.1
GR18324
OVC00372_1
BUC01994_1
TX00502
Hbac_isotig03266
MAC01071_1
HC01285
MC04731
GRC00129_1
GQ422174.1
EX007029.1
EX914911.1
ES409697.1
ES741904.1
FE919848.1
CRC00072_2
Tcir_isotig08948
GQ422182.1
HC01618
AS07700
FC821072.1
ES741430.1
ES410988.1
FE905891.1
ES414297.1
EG025337.1
TX00779
EX009518.1
GR10783
HC08515
RS05970
FG355593.1
ES411877.1
EX911948.1
AA294385.1
Oden_isotig22333
EX912501.1
EX913881.1
EX916235.1
FE907221.1
ES743630.1
TSC01201_1
JI170975.1
Name_isotig07208
EX012115.1
AI205467.1
MI06038
AE01264
EX915363.1
HS00293
FK670276.1
BMC02343_1
MJC00314_1
JO475591.1
EX014011.1
EX013090.1
ES409301.1
ES411265.1
EX915225.1
PTC00373_1
AS01407
HBC12811_1
GQ422173.1
FE916477.1
ES414153.1
PP01304
CJC04417_1
GR16566
Acan_contig10418
EX013969.1
ES743719.1
PT02895
PTC04087_1
GPC01223_1
GR19534
MJ00145
AS03162
GQ422175.1
CK850036.1
XI01096
MIC03530_1
CD203371.1
FE915202.1
AS12812
ES410260.1
HBC24435_1
EX911501.1
EX013331.1
EX011953.1
ES742098.1
PT01070
NB09947
GQ422185.1
EX009410.1
AS17723
ES741719.1
EX540525.1
MCC05532_1
ES412113.1
SR00979
FE918830.1
AS07556
PSC01672
CRC00072_1
SS01331
GR978162.1
SRC00139_1
DIC01634_1
HC02020
PT00713
CR07112
TCC00146_1
BXC02300_1
FE920145.1
HSC01609_1
EX916369.1
GP00964
FE915409.1
SC00040
HBC00287_1
GQ422179.1
HCC01888_1
EX007526.1
SC00220
CJC11697_1
MHC03196_1
GW408705.1
CJC15066_1
FC821653.1
ES744389.1
EX011349.1
ES742805.1
CBC08944_1
BM517335.1
EX914704.1
BU666493.1
AS05624
EX009356.1
FE920223.1
BE202332.1
EX013925.1
ES409042.1
FE919371.1
ES411704.1
GW413251.1
TX01423
GO251938.1
EG025338.1
ASC00264_2
DAC00097_1
EX013068.1
Tcir_isotig05888
ES740538.1
EX007831.1
CJC13630_1
CB037751.1
BU087383.1
ES740877.1
FE910569.1
ES739134.1
EX009147.1
FC815689.1
EX912011.1
LSC01217_1
TS03028
TX00780
EX912079.1
FF679812.1
EX012056.1
CGC00132_1
HG00409
PVC03142_1
XIC00744_1
PPC05794_1
PT01594
EX009823.1
AS16815
FG979975.1
SSC02489_1
BU666248.1
NB08951
HC08512
HG03377
ES408952.1
EX914562.1
AYC00334_1
NAC00938_1
GQ422178.1
EG025798.1
EX912174.1
GQ422184.1
EX916646.1
Acan_isotig13792
EX914113.1
GQ422186.1
ES744348.1
EX010047.1
TSC00419_1
FG621019.1
ES412625.1
EX540009.1
Tcir_isotig17343
GR10767
TSC15173_1
Dviv_isotig10752
BM517395.1
ES741414.1
PT03115
GR978812.1
ES413138.1
ASC00264_1
MI06332
EX010013.1
EX914976.1
Name_isotig05712
ZP00110
CGC00354_1
HC03501
FC821690.1
ASC21438_1
MH02232
HCC00042_2
ACC28824_1
NB07677
FG621020.1
GQ422189.1
EX011656.1
GRC00129_2
EX009249.1
HC03422
FG977398.1
HC08463
DI00420
FG621018.1
CR02756
GR978161.1
HGC00382_1
CBC05734_1
GQ422188.1
Acan_isotig13900
ES413559.1
FE920322.1
JI477831.1
ES411466.1
ES741248.1
MPC00490_1
FG354786.1
EX911798.1
EG025725.1
GQ422190.1
ES410136.1
FC821674.1
EG025724.1
PPC05115_1
MA01756
PEC00328_1
EX916841.1
PPC05165_1
GR14651
EX910308.1
CJC00053_1
TX01397
ES740069.1
MC00561
EX914405.1
GW408391.1
ACC13987_1
EX910541.1
SC00221
GQ422187.1
CBC05698_1
GQ422177.1
EX010609.1
EX915870.1
CBC00281_1
Dviv_isotig30003
EX014065.1
FE918609.1
CRC11164_1
TX01591
MI02072
FG354639.1
ASC11846_1
FE915442.1
ES413555.1
GR19407
ES742274.1
EX910061.1
GQ422180.1
GQ422183.1
ES743406.1
DA03296
CR08265
ZPC00183_1
EX008874.1
GW413495.1
PE00067
ES566400.1
BE132458.1
ES411089.1
EX912548.1
PT00411
ES741038.1
Tcol_isotig16566
TDC01276_1
ACC01120_1
ES744193.1
FC815647.1
FC810262.1
Dviv_isotig33375
ES739620.1
MP00256
Associated_featureWBsf651215
WBsf667088
WBsf993044
WBsf1015254
WBsf227003
Experimental_infoRNAi_result (21)
Expr_patternExpr6523
Expr1021042
Expr1032224
Expr1155551
Expr2015483
Expr2033718
Drives_constructWBCnstr00002529
Construct_productWBCnstr00041964
Microarray_results (19)
Expression_cluster (163)
Interaction (279)
Map_info (3)
ReferenceWBPaper00029008
WBPaper00035149
WBPaper00038491
WBPaper00044760
WBPaper00046446
WBPaper00049828
WBPaper00053133
WBPaper00055090
WBPaper00060235
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene