WormBase Tree Display for Gene: WBGene00003767
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WBGene00003767 | SMap | S_parent | Sequence | B0213 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | nlp | ||||||
Allele (22) | |||||||
Strain | WBStrain00055182 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00033118 | ||||||
00033119 | |||||||
00033120 | |||||||
00033121 | |||||||
00033122 | |||||||
00033123 | |||||||
00033124 | |||||||
00033125 | |||||||
00105987 | |||||||
Ortholog | WBGene00045436 | Caenorhabditis remanei | From_analysis | OMA | |||
WBGene00100569 | Pristionchus pacificus | From_analysis | OMA | ||||
WBGene00119590 | Caenorhabditis japonica | From_analysis | OMA | ||||
WBGene00121896 | Caenorhabditis japonica | From_analysis | OMA | ||||
WBGene00123428 | Caenorhabditis japonica | From_analysis | OMA | ||||
WBGene00181963 | Caenorhabditis japonica | From_analysis | OMA | ||||
WBGene00138055 | Caenorhabditis japonica | From_analysis | OMA | ||||
chrV_pilon.g13883 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Paralog (17) | |||||||
Structured_description | Concise_description | nlp-29 encodes an antimicrobial, neuropeptide-like protein; nlp-29 appears to play a role in innate immunity, as its expression in the epidermis is strongly induced following fungal infection; nlp-29 expression is also induced following physical injury and osmotic stress; nlp-29 expression following fungal infection or physical wounding is regulated by a TIR-1, (Toll-interleukin 1 receptor (TIR) domain protein)/NSY-1/SEK-1/PMK-1 p38 MAPK signaling pathway and the ELT-3 GATA transcription factor; nlp-29 expression in the epidermis is also regulated by the SNF-12 sodium-dependent neurotransmitter symporter acting in concert with the STA-2 STAT transcription factor; the RAB-1 GTPase and the product of R53.4, a mitochondrial ATP synthase subunit f homolog, also appear to play a role in nlp-29 regulation; several reports indicate that nlp-29 is expressed exclusively in the hypodermis, while one report additionally reported expression in the intestine. | Paper_evidence | WBPaper00004975 | |||
WBPaper00006488 | |||||||
WBPaper00030985 | |||||||
WBPaper00038438 | |||||||
WBPaper00029438 | |||||||
WBPaper00031666 | |||||||
WBPaper00032031 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 12 May 2014 00:00:00 | ||||||
Automated_description | Predicted to enable neuropeptide receptor binding activity. Predicted to be involved in defense response to other organism; killing of cells of another organism; and neuropeptide signaling pathway. Predicted to be located in extracellular space. Expressed in hyp7 syncytium; hypodermis; and intestine. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | B0213.4 | |||||
Corresponding_transcript | B0213.4.1 | ||||||
Other_sequence | GW406597.1 | ||||||
GW409716.1 | |||||||
FC816562.1 | |||||||
SRC00966_1 | |||||||
GW407772.1 | |||||||
GW410798.1 | |||||||
GW408788.1 | |||||||
GW406648.1 | |||||||
GW411724.1 | |||||||
GW412994.1 | |||||||
BXC00572_1 | |||||||
GW411702.1 | |||||||
GW410282.1 | |||||||
GW411946.1 | |||||||
SRC08248_1 | |||||||
SRC09755_1 | |||||||
GW412505.1 | |||||||
GW408845.1 | |||||||
GW410659.1 | |||||||
FC811088.1 | |||||||
GW408160.1 | |||||||
GW408226.1 | |||||||
GW410641.1 | |||||||
GW406885.1 | |||||||
PSC00404_2 | |||||||
CJC06925_1 | |||||||
GW408191.1 | |||||||
Tcir_isotig31868 | |||||||
GW408270.1 | |||||||
GW409960.1 | |||||||
GW409917.1 | |||||||
Associated_feature | WBsf646733 | ||||||
WBsf661203 | |||||||
WBsf999719 | |||||||
WBsf1019451 | |||||||
WBsf1019452 | |||||||
Experimental_info | RNAi_result | WBRNAi00027993 | Inferred_automatically | RNAi_primary | |||
WBRNAi00038737 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1694 | ||||||
Expr4723 | |||||||
Expr13697 | |||||||
Expr1012316 | |||||||
Expr1031759 | |||||||
Expr1142948 | |||||||
Expr2014293 | |||||||
Expr2032534 | |||||||
Drives_construct (12) | |||||||
Construct_product | WBCnstr00000499 | ||||||
WBCnstr00012200 | |||||||
WBCnstr00015891 | |||||||
WBCnstr00035881 | |||||||
Microarray_results (18) | |||||||
Expression_cluster (287) | |||||||
Interaction (72) | |||||||
WBProcess | WBbiopr:00000039 | ||||||
Map_info | Map | V | Position | -7.33508 | Error | 0.013926 | |
Positive | Positive_clone | B0213 | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Mapping_data | Multi_point | 4937 | |||||
5043 | |||||||
5400 | |||||||
Pseudo_map_position | |||||||
Reference (70) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |