WormBase Tree Display for Gene: WBGene00003369
expand all nodes | collapse all nodes | view schema
WBGene00003369 | SMap | S_parent | Sequence | C36E6 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | mlc-1 | Person_evidence | WBPerson21 | |||||
Sequence_name | C36E6.3 | ||||||||
Molecular_name | C36E6.3 | ||||||||
C36E6.3.1 | |||||||||
CE34269 | |||||||||
Other_name | C36E6.f | Curator_confirmed | WBPerson1983 | ||||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
CELE_C36E6.3 | Accession_evidence | NDB | BX284606 | ||||||
Public_name | mlc-1 | ||||||||
DB_info | Database | AceView | gene | XS73 | |||||
WormQTL | gene | WBGene00003369 | |||||||
WormFlux | gene | WBGene00003369 | |||||||
NDB | locus_tag | CELE_C36E6.3 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00003369|UniProtKB=P19625 | |||||||
family | PTHR23049 | ||||||||
NCBI | gene | 181776 | |||||||
RefSeq | protein | NM_078428.8 | |||||||
SwissProt | UniProtAcc | P19625 | |||||||
UniProt_GCRP | UniProtAcc | P19625 | |||||||
OMIM | gene | 160781 | |||||||
617378 | |||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | mlc | ||||||||
Allele (20) | |||||||||
Legacy_information | [C.elegansII] Deletions (eg sup-10(n184)) viable, normal muscle; increased lethality of mlc-2(0).Resembles mammalian non-muscle MLC; expressed in both pharynx and body wall. Not transpliced. [Cummins and Anderson 1988; TR] | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (14) | |||||||||
Ortholog (72) | |||||||||
Paralog | WBGene00003370 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | |||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00003372 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | mlc-1 encodes a muscle regulatory myosin light chain that is nearly identical to MLC-2 and functions redundantly with MLC-2 in the body-wall and in pharyngeal muscle to affect L1 larval viability, elongation, and pharyngeal and body-wall muscle development, and also affects locomotion and growth; expressed in the body-wall muscles, pharyngeal muscles, and vulval muscles. | Paper_evidence | WBPaper00001094 | |||||
WBPaper00003259 | |||||||||
WBPaper00006395 | |||||||||
Curator_confirmed | WBPerson48 | ||||||||
Date_last_updated | 09 Aug 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable myosin heavy chain binding activity. Involved in several processes, including muscle organ development; nematode larval development; and regulation of muscle contraction. Part of muscle myosin complex. Expressed in anal depressor muscle; body wall musculature; pharyngeal muscle cell; pharynx; and vulval muscle. Human ortholog(s) of this gene implicated in distal arthrogryposis type 1C and hypertrophic cardiomyopathy 10. Is an ortholog of human MYL10 (myosin light chain 10); MYL5 (myosin light chain 5); and MYL7 (myosin light chain 7). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:0112190 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:29824) | ||||
DOID:0110316 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:7583) | ||||||
DOID:0080326 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:7583) | ||||||
Molecular_info | Corresponding_CDS | C36E6.3 | |||||||
Corresponding_CDS_history | C36E6.3:wp102 | ||||||||
Corresponding_transcript | C36E6.3.1 | ||||||||
Other_sequence | ES743998.1 | ||||||||
Dviv_isotig02073 | |||||||||
HC03480 | |||||||||
TM01791 | |||||||||
JI247926.1 | |||||||||
TS00107 | |||||||||
ES569321.1 | |||||||||
AF331157.1 | |||||||||
GRC00072_1 | |||||||||
TSC00153_1 | |||||||||
DI01836 | |||||||||
AS08125 | |||||||||
Name_isotig09263 | |||||||||
Hbac_isotig00414 | |||||||||
CB036337.1 | |||||||||
EX914333.1 | |||||||||
SSC00300_1 | |||||||||
TSC02384_1 | |||||||||
EX009622.1 | |||||||||
CJC00638_1 | |||||||||
GO249916.1 | |||||||||
CJC16541_1 | |||||||||
ACC01423_1 | |||||||||
TV00778 | |||||||||
EX008911.1 | |||||||||
GO249961.1 | |||||||||
MI06129 | |||||||||
GO251652.1 | |||||||||
HBC01503_1 | |||||||||
EG025513.1 | |||||||||
HG09279 | |||||||||
EX501506.1 | |||||||||
PT00653 | |||||||||
DIC00732_1 | |||||||||
FG354215.1 | |||||||||
Tcol_isotig22465 | |||||||||
EX009755.1 | |||||||||
Dviv_isotig02074 | |||||||||
TCC01603_1 | |||||||||
NB07941 | |||||||||
MC03318 | |||||||||
ES740498.1 | |||||||||
BXC00778_1 | |||||||||
MHC07194_1 | |||||||||
MI04075 | |||||||||
CBC00179_1 | |||||||||
ES743885.1 | |||||||||
EX014460.1 | |||||||||
Tcir_isotig26443 | |||||||||
TS01666 | |||||||||
CRC07209_1 | |||||||||
Hbac_isotig00413 | |||||||||
CN477490.1 | |||||||||
TSC04361_1 | |||||||||
EL888515.1 | |||||||||
MI04162 | |||||||||
GRC00586_2 | |||||||||
BU666615.1 | |||||||||
TDC00283_1 | |||||||||
TMC00609_1 | |||||||||
DA02095 | |||||||||
TM01032 | |||||||||
EX012103.1 | |||||||||
PT00491 | |||||||||
CB037647.1 | |||||||||
CGC01137_1 | |||||||||
EX916199.1 | |||||||||
TS01039 | |||||||||
GR13674 | |||||||||
PT03882 | |||||||||
EG025512.1 | |||||||||
MP00106 | |||||||||
EX012670.1 | |||||||||
EX013244.1 | |||||||||
GO249858.1 | |||||||||
FG587086.1 | |||||||||
Dviv_isotig02082 | |||||||||
GO252345.1 | |||||||||
ES565055.1 | |||||||||
EX915049.1 | |||||||||
FG349180.1 | |||||||||
FG348203.1 | |||||||||
JO474240.1 | |||||||||
MCC00941_1 | |||||||||
CJC07391_1 | |||||||||
ES412027.1 | |||||||||
GR12299 | |||||||||
EX915965.1 | |||||||||
Dviv_isotig02080 | |||||||||
ES743770.1 | |||||||||
GR11991 | |||||||||
ES739636.1 | |||||||||
MC01208 | |||||||||
BUC00021_1 | |||||||||
SSC05660_1 | |||||||||
MCC03927_1 | |||||||||
EX008021.1 | |||||||||
HBC04223_1 | |||||||||
EX008042.1 | |||||||||
CR03963 | |||||||||
ES570614.1 | |||||||||
Tcir_isotig20766 | |||||||||
TVC00197_1 | |||||||||
Tcol_isotig12412 | |||||||||
Acan_isotig12603 | |||||||||
Acan_isotig15246 | |||||||||
TS01225 | |||||||||
EX008472.1 | |||||||||
TX00196 | |||||||||
ES742036.1 | |||||||||
MI01092 | |||||||||
Dviv_isotig02075 | |||||||||
TSC00153_2 | |||||||||
MCC03874_1 | |||||||||
ES411260.1 | |||||||||
Dviv_isotig02072 | |||||||||
NB07851 | |||||||||
GR14347 | |||||||||
Oden_isotig20381 | |||||||||
MJ00253 | |||||||||
Name_isotig06887 | |||||||||
EX500547.1 | |||||||||
GO249791.1 | |||||||||
GRC00586_1 | |||||||||
NBC00097_1 | |||||||||
ES744627.1 | |||||||||
EX011629.1 | |||||||||
Associated_feature (11) | |||||||||
Experimental_info | RNAi_result | WBRNAi00042074 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00024757 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00027213 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00011705 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00011703 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00059498 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr2736 | ||||||||
Expr4931 | |||||||||
Expr1023343 | |||||||||
Expr1031548 | |||||||||
Expr1146071 | |||||||||
Expr2013589 | |||||||||
Expr2031822 | |||||||||
Drives_construct (12) | |||||||||
Construct_product | WBCnstr00036156 | ||||||||
Microarray_results (19) | |||||||||
Expression_cluster (253) | |||||||||
Interaction (32) | |||||||||
Map_info | Map | X | Position | 24.14 | |||||
Well_ordered | |||||||||
Positive | Positive_clone (2) | ||||||||
Mapping_data | Multi_point | 4734 | |||||||
Pos_neg_data | 5855 | ||||||||
5856 | |||||||||
5857 | |||||||||
5858 | |||||||||
5859 | |||||||||
5860 | |||||||||
5861 | |||||||||
Reference (41) | |||||||||
Remark | 2 sequences can't be resolved yet, big duplication in cosmid which is not fully analysed. see also mlc-2. sdm 12/00 | ||||||||
However, blastn of genomic EMBL sequence to genomic clones : mlc-1 matches 100% to C36E6.f apart from 5' exon. So removing .b sequence from here. sdm 12/00 | |||||||||
C36E6.f changed to .3 [sdm 0103] | |||||||||
Method | Gene |