WormBase Tree Display for Gene: WBGene00002016
expand all nodes | collapse all nodes | view schema
| WBGene00002016 | SMap | S_parent | Sequence | Y46H3A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | hsp-16.2 | Person_evidence | WBPerson36 | |||||
| Sequence_name | Y46H3A.3 | ||||||||
| Molecular_name | Y46H3A.3a | ||||||||
| Y46H3A.3a.1 | |||||||||
| CE22002 | |||||||||
| Y46H3A.3b | |||||||||
| CE49428 | |||||||||
| Y46H3A.3b.1 | |||||||||
| Other_name | hsp-16 | ||||||||
| hsp16-2 | Paper_evidence | WBPaper00035961 | |||||||
| CELE_Y46H3A.3 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | hsp-16.2 | ||||||||
| DB_info | Database | AceView | gene | 5C282 | |||||
| WormQTL | gene | WBGene00002016 | |||||||
| WormFlux | gene | WBGene00002016 | |||||||
| NDB | locus_tag | CELE_Y46H3A.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00002016|UniProtKB=P06582 | |||||||
| family | PTHR45640 | ||||||||
| NCBI | gene | 178659 | |||||||
| RefSeq | protein | NM_001392482.1 | |||||||
| NM_001307736.3 | |||||||||
| SwissProt | UniProtAcc | P06582 | |||||||
| TrEMBL | UniProtAcc | V6CLQ2 | |||||||
| UniProt_GCRP | UniProtAcc | P06582 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:26 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | hsp | ||||||||
| Allele (16) | |||||||||
| Strain (36) | |||||||||
| In_cluster | HSP16B | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00038912 | ||||||||
| 00038913 | |||||||||
| 00038914 | |||||||||
| 00038915 | |||||||||
| 00038916 | |||||||||
| 00038917 | |||||||||
| 00038918 | |||||||||
| 00038919 | |||||||||
| 00038920 | |||||||||
| 00105435 | |||||||||
| Ortholog (92) | |||||||||
| Paralog (17) | |||||||||
| Structured_description | Concise_description | hsp-16.2 encodes a 16-kD heat shock protein (HSP) that is a member of the hsp16/hsp20/alphaB-crystallin (HSP16) family of heat shock proteins; hsp-16.2 expression, strongest in intestine and pharynx, is induced in response to heat shock or other environmental stresses; HSP-16.2 has been shown to interact with intracellular human beta amyloid peptide, a primary component of the extracellular plaques found in Alzheimer's disease; HSP-16.2 is likely to function as a passive ligand temporarily preventing unfolded proteins from aggregating. | Paper_evidence | WBPaper00001187 | |||||
| WBPaper00001497 | |||||||||
| WBPaper00002665 | |||||||||
| WBPaper00003787 | |||||||||
| WBPaper00004424 | |||||||||
| WBPaper00005371 | |||||||||
| WBPaper00013029 | |||||||||
| WBPaper00013239 | |||||||||
| WBPaper00013280 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 05 Nov 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable unfolded protein binding activity. Involved in response to heat. Located in cytoplasm. Expressed in several structures, including coelomocyte; enteric muscle; gonad; somatic nervous system; and spermatid. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y46H3A.3a | |||||||
| Y46H3A.3b | |||||||||
| Corresponding_transcript | Y46H3A.3a.1 | ||||||||
| Y46H3A.3b.1 | |||||||||
| Other_sequence | CRC00399_1 | ||||||||
| ES744170.1 | |||||||||
| EX911854.1 | |||||||||
| CBC02622_1 | |||||||||
| EX013438.1 | |||||||||
| TDC01222_1 | |||||||||
| CJC08922_1 | |||||||||
| Tcol_isotig03171 | |||||||||
| HBC00432_1 | |||||||||
| CR09232 | |||||||||
| CR01296 | |||||||||
| GE625347.1 | |||||||||
| NAC02064_1 | |||||||||
| CJC02354_1 | |||||||||
| ES410630.1 | |||||||||
| Hbac_isotig02345 | |||||||||
| CR00606 | |||||||||
| ES740006.1 | |||||||||
| AYC01702_1 | |||||||||
| ES742579.1 | |||||||||
| HBC05301_1 | |||||||||
| CB037841.1 | |||||||||
| GE625744.1 | |||||||||
| EX014864.1 | |||||||||
| Hbac_isotig00524 | |||||||||
| GE625740.1 | |||||||||
| Tcol_isotig03169 | |||||||||
| GE626127.1 | |||||||||
| NAC01378_1 | |||||||||
| ES743364.1 | |||||||||
| BU086647.1 | |||||||||
| ES413061.1 | |||||||||
| GE625184.1 | |||||||||
| GE626419.1 | |||||||||
| EX007554.1 | |||||||||
| EX911203.1 | |||||||||
| ES414336.1 | |||||||||
| CRC08867_1 | |||||||||
| GE625859.1 | |||||||||
| HBC05067_1 | |||||||||
| CR01884 | |||||||||
| GE626238.1 | |||||||||
| Name_isotig03431 | |||||||||
| ES411850.1 | |||||||||
| EX008961.1 | |||||||||
| Tcir_isotig01835 | |||||||||
| ES413540.1 | |||||||||
| EX013030.1 | |||||||||
| Tcol_isotig07833 | |||||||||
| ES413053.1 | |||||||||
| ES740680.1 | |||||||||
| EX012597.1 | |||||||||
| Hbac_isotig00525 | |||||||||
| ES740987.1 | |||||||||
| NAC00022_1 | |||||||||
| CRC03569_1 | |||||||||
| ES411418.1 | |||||||||
| ES412826.1 | |||||||||
| BU088123.1 | |||||||||
| Tcol_isotig19270 | |||||||||
| ES410098.1 | |||||||||
| EX012869.1 | |||||||||
| Name_isotig03726 | |||||||||
| Tcir_isotig01837 | |||||||||
| ES743676.1 | |||||||||
| EX911419.1 | |||||||||
| GE626236.1 | |||||||||
| EX010547.1 | |||||||||
| GE625842.1 | |||||||||
| Tcir_isotig01836 | |||||||||
| AE01331 | |||||||||
| CR01839 | |||||||||
| Tcir_isotig01838 | |||||||||
| EX007247.1 | |||||||||
| CRC00399_2 | |||||||||
| HBC02087_1 | |||||||||
| Tcol_isotig03168 | |||||||||
| Tcol_isotig03170 | |||||||||
| ES741118.1 | |||||||||
| EX007742.1 | |||||||||
| GE625075.1 | |||||||||
| HBC09920_1 | |||||||||
| Tcol_isotig03173 | |||||||||
| Acan_isotig12302 | |||||||||
| ES740788.1 | |||||||||
| Tcol_isotig03172 | |||||||||
| Associated_feature | WBsf652481 | ||||||||
| WBsf652482 | |||||||||
| WBsf919559 | |||||||||
| WBsf919560 | |||||||||
| WBsf919561 | |||||||||
| WBsf919562 | |||||||||
| WBsf233356 | |||||||||
| WBsf233357 | |||||||||
| WBsf233358 | |||||||||
| Experimental_info | RNAi_result (10) | ||||||||
| Expr_pattern (12) | |||||||||
| Drives_construct (233) | |||||||||
| Construct_product | WBCnstr00004969 | ||||||||
| WBCnstr00010254 | |||||||||
| WBCnstr00021901 | |||||||||
| WBCnstr00036520 | |||||||||
| WBCnstr00042208 | |||||||||
| Antibody | WBAntibody00000050 | ||||||||
| WBAntibody00001324 | |||||||||
| WBAntibody00001797 | |||||||||
| WBAntibody00001844 | |||||||||
| WBAntibody00001859 | |||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (393) | |||||||||
| Interaction (315) | |||||||||
| WBProcess | WBbiopr:00000050 | ||||||||
| Map_info | Map | V | Position | -17.5804 | Error | 0.043798 | |||
| Positive | Positive_clone | Y46H3A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4418 | |||||||
| 5335 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (244) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
