WormBase Tree Display for Gene: WBGene00001522
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WBGene00001522 | Evidence | CGC_data_submission | |||||
---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | D2089 | ||||
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | gbh | ||||||
Allele (59) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (12) | |||||||
Ortholog (36) | |||||||
Paralog | WBGene00001523 | Caenorhabditis elegans | From_analysis | TreeFam | |||
Panther | |||||||
WormBase-Compara | |||||||
Structured_description | Concise_description | gbh-1 encodes a predicted ortholog of human hBBOX1; expressed in the intestine and in head and body muscles. | Paper_evidence | WBPaper00018600 | |||
Curator_confirmed | WBPerson48 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Predicted to enable gamma-butyrobetaine dioxygenase activity and iron ion binding activity. Predicted to be involved in carnitine biosynthetic process. Predicted to be located in mitochondrion. Is an ortholog of human BBOX1 (gamma-butyrobetaine hydroxylase 1). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | D2089.5 | |||||
Corresponding_transcript | D2089.5.1 | ||||||
Other_sequence | HC08865 | ||||||
JO469796.1 | |||||||
JI170248.1 | |||||||
Oden_isotig07794 | |||||||
Tcir_isotig09483 | |||||||
HCC11410_1 | |||||||
AE00154 | |||||||
AE04766 | |||||||
Tcol_isotig08922 | |||||||
Tcol_isotig24266 | |||||||
Oden_isotig07798 | |||||||
Tcir_isotig03079 | |||||||
Tcol_isotig08923 | |||||||
Oden_isotig07796 | |||||||
Oden_isotig07797 | |||||||
Oden_isotig07799 | |||||||
Hbac_isotig04839 | |||||||
AYC03765_1 | |||||||
Acan_isotig22549 | |||||||
Acan_isotig15139 | |||||||
Oden_isotig07795 | |||||||
Tcir_isotig03080 | |||||||
Oden_isotig07800 | |||||||
AF526942.1 | |||||||
FG977108.1 | |||||||
HBC26110_1 | |||||||
Associated_feature | WBsf650516 | ||||||
Experimental_info | RNAi_result | WBRNAi00002369 | Inferred_automatically | RNAi_primary | |||
WBRNAi00043512 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00030424 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1026771 | ||||||
Expr1030916 | |||||||
Expr1147506 | |||||||
Expr2011958 | |||||||
Expr2030195 | |||||||
Drives_construct | WBCnstr00036890 | ||||||
Construct_product | WBCnstr00036890 | ||||||
Microarray_results (19) | |||||||
Expression_cluster (133) | |||||||
Interaction (62) | |||||||
Map_info | Map | II | Position | 3.12352 | Error | 8.2e-05 | |
Positive | Positive_clone | D2089 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00011400 | ||||||
WBPaper00011648 | |||||||
WBPaper00018600 | |||||||
WBPaper00038491 | |||||||
WBPaper00055090 | |||||||
Remark | Sequence connection from [Apicella AJ, Bazzicalupo P] | ||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
Method | Gene |