WormBase Tree Display for Gene: WBGene00000888
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WBGene00000888 | SMap | S_parent | Sequence | C34D4 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | cyn-12 | Person_evidence | WBPerson466 | |||||
Sequence_name | C34D4.12 | ||||||||
Molecular_name (6) | |||||||||
Other_name | cyp-12 | Person_evidence | WBPerson466 | ||||||
CELE_C34D4.12 | Accession_evidence | NDB | BX284604 | ||||||
Public_name | cyn-12 | ||||||||
DB_info | Database (12) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
2 | 20 Sep 2004 16:20:03 | WBPerson1971 | Name_change | CGC_name | cyp-12 -> cyn-12 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | cyn | ||||||||
Allele (15) | |||||||||
Legacy_information | [Page AP] C34D4.12. No mutants known. Transpliced to SL1 and SL2 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00061263 | ||||||||
00061264 | |||||||||
00061265 | |||||||||
00061266 | |||||||||
00061267 | |||||||||
00061268 | |||||||||
00061269 | |||||||||
00061270 | |||||||||
00107948 | |||||||||
00107949 | |||||||||
Ortholog (37) | |||||||||
Paralog (18) | |||||||||
Structured_description | Concise_description | cyn-12 encodes a member of the cyclophilin family that is related to human PPIL1 (CGI-124); based upon its sequence similarity, CYN-12 is predicted to be a cytoplasmic protein potentially involved in a wide range of signal transduction pathways. | Paper_evidence | WBPaper00026884 | |||||
Curator_confirmed | WBPerson48 | ||||||||
WBPerson1843 | |||||||||
Date_last_updated | 20 Mar 2007 00:00:00 | ||||||||
Automated_description | Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Predicted to be part of catalytic step 2 spliceosome. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia type 14. Is an ortholog of human PPIL1 (peptidylprolyl isomerase like 1). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:0112325 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9260) | ||||
Molecular_info | Corresponding_CDS | C34D4.12a | |||||||
C34D4.12b | |||||||||
Corresponding_transcript | C34D4.12a.1 | ||||||||
C34D4.12b.1 | |||||||||
Other_sequence | Tcol_isotig09707 | ||||||||
Tcir_isotig02859 | |||||||||
ACC05392_1 | |||||||||
Acan_isotig14283 | |||||||||
JI178116.1 | |||||||||
Oden_isotig17880 | |||||||||
CR01429 | |||||||||
EY465674.1 | |||||||||
ASC02519_1 | |||||||||
JO470797.1 | |||||||||
CK850470.1 | |||||||||
BUC02109_1 | |||||||||
PPC01228_1 | |||||||||
HBC21164_1 | |||||||||
GRC00671_1 | |||||||||
PP02202 | |||||||||
Acan_isotig07294 | |||||||||
Dviv_contig23627 | |||||||||
EY465178.1 | |||||||||
CRC11370_1 | |||||||||
AYC01672_1 | |||||||||
EX913144.1 | |||||||||
AE03320 | |||||||||
HGC12352_1 | |||||||||
EY466980.1 | |||||||||
EY473239.1 | |||||||||
GO249926.1 | |||||||||
JI221409.1 | |||||||||
Dviv_isotig06814 | |||||||||
EX014164.1 | |||||||||
GPC02698_1 | |||||||||
Dviv_isotig06813 | |||||||||
Tcir_isotig02860 | |||||||||
EY473894.1 | |||||||||
EY462026.1 | |||||||||
WBC01867_1 | |||||||||
ASC03805_1 | |||||||||
GP03351 | |||||||||
Hbac_isotig04243 | |||||||||
Tcir_isotig13575 | |||||||||
EY471080.1 | |||||||||
Tcol_isotig09706 | |||||||||
GR11995 | |||||||||
JI469552.1 | |||||||||
AS02773 | |||||||||
Dviv_isotig06811 | |||||||||
CJC03807_1 | |||||||||
HG00559 | |||||||||
CBC06808_1 | |||||||||
Oden_isotig17879 | |||||||||
AS11059 | |||||||||
XI01497 | |||||||||
XIC00240_1 | |||||||||
Tcir_isotig25476 | |||||||||
Associated_feature | WBsf651890 | ||||||||
WBsf230223 | |||||||||
Experimental_info | RNAi_result (12) | ||||||||
Expr_pattern | Expr1011395 | ||||||||
Expr1030553 | |||||||||
Expr1145887 | |||||||||
Expr2010664 | |||||||||
Expr2028904 | |||||||||
Drives_construct | WBCnstr00037218 | ||||||||
Construct_product | WBCnstr00037218 | ||||||||
Microarray_results (19) | |||||||||
Expression_cluster (110) | |||||||||
Interaction (56) | |||||||||
Map_info | Map | IV | Position | 3.29058 | Error | 8.3e-05 | |||
Positive | Positive_clone | C34D4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00026884 | ||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
Remark | This gene has been renamed with approval of the CGC (cyp-12->cyn-12) | Person_evidence | WBPerson466 | ||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |