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WormBase Tree Display for Gene: WBGene00004454

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Name Class

WBGene00004454SMapS_parentSequenceC09H10
IdentityVersion2
NameCGC_namerpl-36.APerson_evidenceWBPerson4025
Sequence_nameC09H10.2
Molecular_nameC09H10.2
C09H10.2.1
CE02131
C09H10.2.2
Other_name2L388Accession_evidenceEMBLAF304121
rpl-41
CELE_C09H10.2Accession_evidenceNDBBX284602
Public_namerpl-36.A
DB_infoDatabaseAceViewgene2L388
WormQTLgeneWBGene00004454
WormFluxgeneWBGene00004454
NDBlocus_tagCELE_C09H10.2
PanthergeneCAEEL|WormBase=WBGene00004454|UniProtKB=P48166
familyPTHR10369
NCBIgene174695
RefSeqproteinNM_063974.8
SwissProtUniProtAccP48166
TREEFAMTREEFAM_IDTF300213
UniProt_GCRPUniProtAccP48166
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:35WBPerson1971EventImportedInitial conversion from geneace
202 Oct 2015 11:36:38WBPerson2970Name_changeCGC_namerpl-36.A
Other_namerpl-41
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classrpl
AlleleWBVar01499702
WBVar01477991
WBVar01498435
WBVar01499235
WBVar00766792
WBVar01499606
WBVar02130695
WBVar01498940
WBVar00377688
Legacy_informationOrthologous to yeast (S.cerevisiae) ribosomal protein rpl41 using blastP
RNASeq_FPKM (74)
GO_annotation00046776
00046777
00046778
00046779
00112922
00112923
00112924
Contained_in_operonCEOP2717
Ortholog (43)
Structured_descriptionAutomated_descriptionPredicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is an ortholog of human RPL36A (ribosomal protein L36a) and RPL36AL (ribosomal protein L36a like).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC09H10.2
Corresponding_transcriptC09H10.2.1
C09H10.2.2
Other_sequenceHBC00053_1
EX913060.1
ES742253.1
EX007603.1
MJ01610
RSC00220_1
AS03185
DI01952
AS10801
EX913419.1
AS10927
AS02749
AS17128
ES410670.1
EX010022.1
MJ00531
AE00016
AS10829
ES409857.1
AS07914
EX015118.1
PTC04305_1
AS12241
HBC08532_1
EX008981.1
AS12593
MI02224
GO249781.1
EX556012.1
EX009833.1
ASC00723_2
FE919173.1
GO249487.1
FE910646.1
BM965369.1
FK670278.1
GR17917
EX911916.1
MCC03849_1
AS11085
EX914745.1
EX012709.1
HC02247
AS10968
AS14480
TVC00667_1
AS03900
FE918633.1
AS14100
AS16901
GR11217
MHC02974_1
AS10893
HGC00734_1
AE03978
AS14273
MI08312
ES741154.1
FE920124.1
EX915262.1
EG025376.1
FC821240.1
GR18603
ES410766.1
MCC05769_1
Hbac_isotig06534
AS10747
ES740489.1
ES413074.1
Oden_isotig26829
EX912454.1
Acan_isotig00135
EX008079.1
FE919821.1
NB07743
ACC01472_1
BU088730.1
CJC03447_1
FE905728.1
FC821083.1
ES414096.1
AE01643
Name_isotig06446
EX007154.1
EX012264.1
EX911199.1
AS12755
BG310578.1
EX912839.1
AS01973
CR01893
CRC00138_1
EX015194.1
PE00435
MJ01477
GR10443
CJC16987_1
MJC00085_1
EX012564.1
FE918964.1
FE919193.1
DI02436
MJ01621
EX910338.1
ES410693.1
FE920101.1
NB09518
DN557616.1
DA03943
GR17918
AS16233
NAC02177_1
FC821652.1
ASC24663_1
AS14311
AS10844
EX916033.1
FC821853.1
ES744230.1
FE914090.1
CB035445.1
FE918878.1
Acan_isotig15360
FE914191.1
Dviv_isotig33263
EX911691.1
MIC06971_1
HC01282
EX007921.1
PPC00557_1
TV00810
RS10638
Name_isotig04174
BMC12156_1
DI02344
GPC02081_1
Tcir_isotig30807
EX013209.1
Tcir_isotig12977
FC821700.1
MI02589
FE911914.1
ES740624.1
RSC01512_1
EX910095.1
ES740761.1
EX912573.1
EX910354.1
AW288100.1
EX914581.1
CJC13519_1
FE919819.1
EX008888.1
FE917256.1
CJC10988_1
ASC15602_2
BMC12155_1
FE908772.1
EY461795.1
AS11475
ES741587.1
JI171944.1
AS02310
XI02058
CB043015.1
EX013917.1
GR14611
BMC01314_1
FC821031.1
ES411009.1
TDC00148_1
ES409769.1
DIC01608_1
CJC00136_3
NBC04306_1
AS16357
ASC00424_1
ES412723.1
FE906389.1
AE00140
CBC01014_1
EX007531.1
GW410979.1
EX010295.1
Oden_isotig29084
AS08137
SR00832
AS12546
RS10109
EY460258.1
EX566919.1
Acan_isotig00134
FE914523.1
EX914552.1
EX911448.1
ES409684.1
MJ01588
CBC06894_1
BMC04642_1
PSC03358_1
HCC00738_2
HC03795
AS13164
EG025403.1
NB09568
AS13139
ES411598.1
PTC03631_1
EX538587.1
AS14398
HGC12298_1
PTC03212_1
FC820920.1
SRC00001_1
ES741670.1
MH02028
FE913826.1
AS11596
BM517306.1
ACC20514_1
JO472894.1
AS12518
HG02889
DA04289
HBC07214_1
WBC00987_1
HG05422
EX914929.1
Acan_isotig00136
TX01897
ES409211.1
Tcir_isotig10814
EX008830.1
AS05902
FE909729.1
JI214466.1
CD455428.1
PEC00267_1
AS17438
SS00658
AS11753
TX00468
ACC21213_1
AS16907
EX008437.1
PP00467
GP02670
ASC28828_1
GP02030
RSC04221_1
HC03499
EY471039.1
BXC01982_1
MH06941
PT04272
EX009317.1
EX915180.1
FE919773.1
OVC03282_1
ES412503.1
BM517228.1
ACC15612_1
CB042968.1
CBC10719_1
NBC01016_1
FG355356.1
FE907216.1
EX914276.1
EX914244.1
HCC00738_1
FD515872.1
EX554418.1
EX912811.1
DAC01477_1
EY473463.1
AYC00440_1
Acan_isotig00133
CBC09405_1
HC04663
AS14289
MI08811
EX009738.1
AS12819
AS11285
ES743429.1
DI01951
TCC00472_1
CJC00136_2
HBC00053_2
BU088451.1
ES408951.1
ES408902.1
Acan_isotig00132
ASC40267_1
ASC00723_3
ES741774.1
GR18604
MIC04050_1
FE918918.1
FE911169.1
MC01138
DA04869
GRC03659_1
FC821549.1
AS16893
ES741224.1
ES742158.1
ES741686.1
EX008067.1
AS11715
PT00728
EX007339.1
AS08390
MJC00615_1
EX556011.1
MPC01097_1
OOC03060_1
ASC02717_1
BU088374.1
FG582076.1
EX013044.1
ACC27669_1
PT00007
ASC00723_1
EX007654.1
EX916627.1
ES412127.1
FE918749.1
MH09230
DAC01751_1
DI02314
PPC07797_1
EX910760.1
EX011648.1
CR12141
CBC14856_1
ES414272.1
XIC00696_1
EX013963.1
FE920062.1
MJ01514
HBC05820_1
GO250320.1
LSC00735_1
Tcol_isotig13318
AS16731
EX912358.1
FE914000.1
EX566877.1
FE919403.1
HG03501
CK850572.1
RS06225
ES744505.1
CB043596.1
AS14217
CD455502.1
EX912670.1
AS08766
EX011173.1
FE918265.1
ES409975.1
EX914142.1
DA03267
AS10819
ES414347.1
EX009807.1
AS03918
SSC04143_1
FE909489.1
CSC02079_1
CJC00136_1
MH06354
Acan_isotig00131
ACC15004_1
FD517073.1
JO472795.1
Associated_featureWBsf989622
WBsf223889
WBsf223890
Experimental_infoRNAi_resultWBRNAi00108895Inferred_automaticallyRNAi_primary
WBRNAi00109059Inferred_automaticallyRNAi_primary
WBRNAi00040253Inferred_automaticallyRNAi_primary
WBRNAi00096306Inferred_automaticallyRNAi_primary
WBRNAi00096448Inferred_automaticallyRNAi_primary
WBRNAi00085745Inferred_automaticallyRNAi_primary
WBRNAi00096304Inferred_automaticallyRNAi_primary
WBRNAi00096714Inferred_automaticallyRNAi_primary
WBRNAi00064932Inferred_automaticallyRNAi_primary
WBRNAi00094446Inferred_automaticallyRNAi_primary
WBRNAi00095964Inferred_automaticallyRNAi_primary
WBRNAi00024515Inferred_automaticallyRNAi_primary
WBRNAi00096671Inferred_automaticallyRNAi_primary
WBRNAi00072929Inferred_automaticallyRNAi_primary
WBRNAi00096677Inferred_automaticallyRNAi_primary
WBRNAi00094330Inferred_automaticallyRNAi_primary
WBRNAi00066858Inferred_automaticallyRNAi_primary
WBRNAi00108950Inferred_automaticallyRNAi_primary
WBRNAi00094071Inferred_automaticallyRNAi_primary
WBRNAi00096668Inferred_automaticallyRNAi_primary
WBRNAi00096796Inferred_automaticallyRNAi_primary
WBRNAi00072928Inferred_automaticallyRNAi_primary
WBRNAi00096708Inferred_automaticallyRNAi_primary
WBRNAi00095887Inferred_automaticallyRNAi_primary
WBRNAi00095490Inferred_automaticallyRNAi_primary
WBRNAi00096711Inferred_automaticallyRNAi_primary
WBRNAi00096039Inferred_automaticallyRNAi_primary
WBRNAi00114616Inferred_automaticallyRNAi_primary
WBRNAi00096630Inferred_automaticallyRNAi_primary
WBRNAi00096116Inferred_automaticallyRNAi_primary
WBRNAi00096365Inferred_automaticallyRNAi_primary
WBRNAi00096680Inferred_automaticallyRNAi_primary
WBRNAi00109005Inferred_automaticallyRNAi_primary
WBRNAi00096531Inferred_automaticallyRNAi_primary
WBRNAi00108840Inferred_automaticallyRNAi_primary
WBRNAi00072927Inferred_automaticallyRNAi_primary
WBRNAi00096674Inferred_automaticallyRNAi_primary
WBRNAi00096193Inferred_automaticallyRNAi_primary
WBRNAi00028750Inferred_automaticallyRNAi_primary
WBRNAi00096270Inferred_automaticallyRNAi_primary
Expr_patternExpr1021731
Expr1032258
Expr1144323
Expr2015468
Expr2033703
Drives_constructWBCnstr00037925
Construct_productWBCnstr00037925
Microarray_results (18)
Expression_cluster (157)
Interaction (153)
Map_infoMapIIPosition3.21535Error0.010685
PositivePositive_cloneC09H10Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00038491
WBPaper00049828
WBPaper00055090
Remarkrpl-41 is described as Orthologous to yeast (S.cerevisiae) ribosomal protein rpl41 using blastP"; BlastP with S. cerevisiae Mak18p (gb|AAB68420) gives one hit in the genome with E < 0.01, C09H10.2Person_evidenceWBPerson567
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene