WormBase Tree Display for Gene: WBGene00003960
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WBGene00003960 | SMap | S_parent | Sequence | F54D5 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | pcs-1 | Person_evidence | WBPerson819 | |||||
Sequence_name | F54D5.1 | ||||||||
Molecular_name | F54D5.1a | ||||||||
F54D5.1a.1 | |||||||||
CE40964 | |||||||||
F54D5.1b | |||||||||
CE40965 | |||||||||
F54D5.1b.1 | |||||||||
Other_name | TFIIE-beta | Accession_evidence | EMBL | Y08815 | |||||
CePCS | Paper_evidence | WBPaper00037940 | |||||||
CELE_F54D5.1 | Accession_evidence | NDB | BX284602 | ||||||
Public_name | pcs-1 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | pcs | ||||||||
Allele (47) | |||||||||
Strain | WBStrain00039997 | ||||||||
WBStrain00040000 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (23) | |||||||||
Ortholog (25) | |||||||||
Structured_description | Concise_description | pcs-1 encodes a phytochelatin synthase; PCS-1 exhibits cadmium-activated synthesis of phytochelatins, peptides with the general structure (gamma-Glu-Cys)n-Xaa that sequester heavy metals, and is required in animals for the response to, and detoxification of cadmium; when expressed in yeast, PCS-1 also mediates the detoxification of mercury and arsenic. | Paper_evidence | WBPaper00004738 | |||||
WBPaper00025092 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 12 Mar 2010 00:00:00 | ||||||||
Automated_description | Enables glutathione gamma-glutamylcysteinyltransferase activity. Involved in phytochelatin biosynthetic process and response to metal ion. Expressed in several structures, including coelomocyte; non-striated muscle; pharyngeal-intestinal valve; pharynx; and rectal valve cell. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F54D5.1a | |||||||
F54D5.1b | |||||||||
Corresponding_CDS_history | F54D5.1:wp175 | ||||||||
Corresponding_transcript | F54D5.1a.1 | ||||||||
F54D5.1b.1 | |||||||||
Other_sequence (29) | |||||||||
Associated_feature | WBsf650596 | ||||||||
WBsf666168 | |||||||||
WBsf981287 | |||||||||
WBsf223963 | |||||||||
Experimental_info | RNAi_result (11) | ||||||||
Expr_pattern | Chronogram598 | ||||||||
Expr108 | |||||||||
Expr3101 | |||||||||
Expr9005 | |||||||||
Expr1025837 | |||||||||
Expr1031884 | |||||||||
Expr1152108 | |||||||||
Expr2014789 | |||||||||
Expr2033023 | |||||||||
Drives_construct | WBCnstr00002739 | ||||||||
WBCnstr00007021 | |||||||||
WBCnstr00011137 | |||||||||
WBCnstr00035773 | |||||||||
Construct_product | WBCnstr00035773 | ||||||||
Microarray_results (20) | |||||||||
Expression_cluster (112) | |||||||||
Interaction | WBInteraction000313166 | ||||||||
WBInteraction000524519 | |||||||||
WBInteraction000566350 | |||||||||
WBInteraction000566629 | |||||||||
WBInteraction000576338 | |||||||||
WBProcess | WBbiopr:00000065 | ||||||||
WBbiopr:00000096 | |||||||||
Map_info | Map | II | Position | 3.768 | Error | 0.004725 | |||
Positive | Positive_clone | F54D5 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Mapping_data | Multi_point (2) | ||||||||
Pseudo_map_position | |||||||||
Reference (17) | |||||||||
Remark | Sequence connection from [Vatamaniuk OK, Bucher EA]. krb 13/11/01 | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |