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WormBase Tree Display for Gene: WBGene00239156

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Name Class

WBGene00239156SMapS_parentSequenceOVOC_OM1b_113
IdentityVersion2
NameCGC_nameOvo-smc-4From_analysisInferred_from_orthology
Sequence_nameOVOC2347
Molecular_nameOVOC2347
OVOC2347.1
OVP00309
OVOC2347.2
Public_nameOvo-smc-4
SpeciesOnchocerca volvulus
HistoryVersion_change129 Nov 2013 15:05:33WBPerson3111EventImportedMAKER import
224 Jan 2014 16:01:33WBPerson4055Name_changeCGC_nameOvo-smc-4
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsmc
RNASeq_FPKMWBls:00001013.10676From_analysisRNASeq.ovolvulus.total_over_all_stages.control_median
8.49118From_analysisRNASeq.ovolvulus.total_over_all_stages.control_mean
WBls:0000104 (16)
WBls:00001073.61834From_analysisRNASeq.ovolvulus.WBls:0000107.control_mean
RNASeq.ovolvulus.WBls:0000107.control_median
RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395
WBls:000010813.7473From_analysisRNASeq.ovolvulus.WBls:0000108.control_mean
1.66681From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391
17.3127From_analysisRNASeq.ovolvulus.WBls:0000108.control_median
RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392
22.2623From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393
WBls:000066412.7745From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397
13.246From_analysisRNASeq.ovolvulus.WBls:0000664.control_mean
RNASeq.ovolvulus.WBls:0000664.control_median
13.7176From_analysisRNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396
GO_annotation00253079
00253080
00253081
00253082
OrthologWBGene00154846Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00163962Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00191546Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00037531Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00039202Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00234061Brugia malayiFrom_analysisWormBase-Compara
WBGene00001086Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00004874Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00119446Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00136675Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00208945Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00209751Caenorhabditis japonicaFrom_analysisWormBase-Compara
CBOVI.g4439Caenorhabditis bovisFrom_analysisWormBase-Compara
CBOVI.g4612Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g5410Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g5880Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g11955Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g20806Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g21869Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g22290Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g14748Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g16291Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g13870Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g22438Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g1002Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g16477Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g5472Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g5778Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g6519Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g6625Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g6626Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g6627Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g14541Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g729Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g11994Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g13553Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g13893Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g22807Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g29992Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g3916Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g1279Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g22044Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00523.g11845Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00624.g12916Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-dpy-27Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cni-smc-4Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold478.g1756Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold478.g1757Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold629.g10852Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold629.g10853Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00378.g10414Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_00664.g14177Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_04454.g32970Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_14942Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_010071Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g04055Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g1000Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g5387Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_30070000Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_30319900Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00061748Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00061749Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00071103Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00089965Pristionchus pacificusFrom_analysisWormBase-Compara
chrIII_pilon.g7320Caenorhabditis elegansFrom_analysisWormBase-Compara
chrIII_pilon.g7484Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00263197Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00265112Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00266948Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00294874Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00240400Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00245556Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00246291Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00247320Onchocerca volvulusFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable ATP binding activity and ATP hydrolysis activity. Predicted to be involved in chromosome organization. Predicted to be located in chromosome. Is an ortholog of C. elegans dpy-27 and smc-4. In C. elegans, dpy-27 is involved in dosage compensation by hypoactivation of X chromosome.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSOVOC2347
Corresponding_transcriptOVOC2347.1
OVOC2347.2
Other_sequence (33)
MethodGene