WormBase Tree Display for Gene: WBGene00190055

WBGene00190055 SMap: S_parent: Sequence: Cbre_Contig271
  Identity: Version: 6
    Name: CGC_name: Cbn-lgc-30 From_analysis: Inferred_from_orthology
      Sequence_name: CBN28090
      Molecular_name: CBN28090
        CBN28090.1
        CN35388
      Public_name: Cbn-lgc-30
    Species: Caenorhabditis brenneri
    History: Version_change: 1 20 May 2009 11:55:52 WBPerson1847 Event: Created
        2 20 Mar 2018 10:26:11 WBPerson4025 Name_change: CGC_name: Cbn-lgc-30
        3 08 Feb 2019 15:42:29 WBPerson1983 Name_change: CGC_name: Removed
        4 08 May 2019 10:09:24 WBPerson1983 Name_change: CGC_name: Cbn-lgc-30
        5 28 May 2021 19:05:21 WBPerson1983 Name_change: CGC_name: Removed
        6 28 Jul 2021 11:12:28 WBPerson1983 Name_change: CGC_name: Cbn-lgc-30
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lgc
    RNASeq_FPKM: WBls:0000002 0 From_analysis (12)
      WBls:0000004 0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
            RNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
            RNASeq.brenneri.WBls:0000004.control_mean
            RNASeq.brenneri.WBls:0000004.control_median
      WBls:0000024 11.818 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
        0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
        3.86596 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
        5.43999 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
        7.14783 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
        8.12917 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
      WBls:0000038 1.3032 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
        1.504 From_analysis: RNASeq.brenneri.WBls:0000038.control_mean
            RNASeq.brenneri.WBls:0000038.control_median
        1.70481 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
      WBls:0000041 (12)
      WBls:0000101 0.671981 From_analysis: RNASeq.brenneri.total_over_all_stages.control_mean
        0 From_analysis: RNASeq.brenneri.total_over_all_stages.control_median
    GO_annotation: 00225641
      00225642
      00225643
      00225644
      00225645
    Ortholog: WBGene00019069 Caenorhabditis elegans From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00067762 Caenorhabditis remanei From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00137889 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      CBOVI.g8813 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g4493 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g15869 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g2442 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g2179 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g17144 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g17925 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g5903 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g2397 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g13528 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00015.g1010 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_IV.g15851 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g20799 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_02243.g25590 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_05648 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_015739 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g11164 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g7266 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_40013210 Caenorhabditis inopinata From_analysis: WormBase-Compara
      WBGene00034644 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00224832 Brugia malayi From_analysis: WormBase-Compara
      chrIV_pilon.g9597 Caenorhabditis elegans From_analysis: WormBase-Compara
      chrIV_pilon.g9599 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00241625 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00267115 Strongyloides ratti From_analysis: WormBase-Compara
    Paralog (128)
    Structured_description: Automated_description: Predicted to enable monoatomic ion channel activity and transmembrane signaling receptor activity. Predicted to be involved in monoatomic ion transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans lgc-30. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBN28090
    Corresponding_transcript: CBN28090.1
    Other_sequence (11)
  Experimental_info: Microarray_results: GPL14142_CBN28090_274-333_0.917_13_C
      GPL14142_CBN28090_713-772_0.926_7_B
      GPL14142_CBN28090_754-813_0.955_2_A
  Remark: [190208 pad] The CGC name Cbn-lgc-30 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
    [210528 pad] The CGC name Cbn-lgc-30 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
  Method: Gene