WormBase Tree Display for Gene: WBGene00137466

WBGene00137466 SMap: S_parent: Sequence: Cjap.Contig17604
  Identity: Version: 3
    Name: CGC_name: Cjp-vars-1 From_analysis: Inferred_from_orthology
      Sequence_name: CJA18260
      Molecular_name: CJA18260
        CJA18260.1
        JA39901
      Other_name: Cjp-vrs-1 From_analysis: Inferred_from_orthology
      Public_name: Cjp-vars-1
    Species: Caenorhabditis japonica
    History: Version_change: 1 29 Aug 2008 14:34:23 WBPerson4055 Event: Imported: from NGASP
              Name_change: CGC_name: Cjp-vrs-1
        2 15 Feb 2010 11:25:56 WBPerson4055 Name_change: CGC_name: Cjp-vars-1
                Other_name: Cjp-vrs-1
        3 29 Jul 2011 11:13:38 WBPerson4055 Event: Imported: Augustus import
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: vars
    RNASeq_FPKM: WBls:0000004 11.9191 From_analysis: RNASeq.japonica.WBls:0000004.control_mean
            RNASeq.japonica.WBls:0000004.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
      WBls:0000027 12.1006 From_analysis: RNASeq.japonica.WBls:0000027.control_mean
            RNASeq.japonica.WBls:0000027.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
      WBls:0000038 12.1699 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
        14.1034 From_analysis: RNASeq.japonica.WBls:0000038.control_mean
            RNASeq.japonica.WBls:0000038.control_median
        16.0369 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
      WBls:0000041 12.4616 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
        13.1712 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
        14.5715 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
        17.4862 From_analysis: RNASeq.japonica.WBls:0000041.control_median
        18.9362 From_analysis: RNASeq.japonica.WBls:0000041.control_mean
        20.401 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
        23.7083 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
        28.8482 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
        28.9986 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
        9.32949 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
      WBls:0000101 13.1712 From_analysis: RNASeq.japonica.total_over_all_stages.control_median
        15.6705 From_analysis: RNASeq.japonica.total_over_all_stages.control_mean
    GO_annotation: 00201145
      00201146
      00201147
      00201148
      00201149
      00201150
      00201151
      00201152
    Ortholog: WBGene00006935 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00006936 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00032507 Caenorhabditis briggsae From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00052972 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00061206 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00078956 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00146015 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00139683 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00144282 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      CBOVI.g458 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g10877 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP21.g12754 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g8653 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g4350 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g9365 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g8159 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g6809 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g7212 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g8211 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g9774 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g7578 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00997.g15293 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_00997.g15294 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-vars-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold615.g6005 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00553.g12779 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_03666 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_018737 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g06097 Oscheius tipulae From_analysis: WormBase-Compara
      Sp34_50099800 Caenorhabditis inopinata From_analysis: WormBase-Compara
      WBGene00118651 Pristionchus pacificus From_analysis: WormBase-Compara
      chrV_pilon.g14885 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00243912 Onchocerca volvulus From_analysis: WormBase-Compara
    Paralog (14)
    Structured_description: Automated_description: Predicted to enable ATP binding activity; catalytic activity, acting on a tRNA; and glycosyltransferase activity. Predicted to be involved in valyl-tRNA aminoacylation. Is an ortholog of C. elegans vars-1. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CJA18260
    Corresponding_transcript: CJA18260.1
    Other_sequence (44)
  Experimental_info: Expr_pattern: Expr1073817
      Expr1074747
      Expr1081050
    Microarray_results: GPL14145_CJA08881_346-405_0.862_52_B
      GPL14145_CJA08881_349-408_0.873_41_A
      GPL14145_CJA08881_599-658_0.895_24_C
      GPL14145_CJA18260_2154-2213_0.887_37_C
      GPL14145_CJA18260_2448-2507_0.886_38_B
      GPL14145_CJA18260_2697-2756_0.936_5_A
      GPL14145_CJA22487_40-99_0.942_1_A
  Method: Gene