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WormBase Tree Display for Gene: WBGene00055767

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Name Class

WBGene00055767SMapS_parentSequenceCrem_Contig12
IdentityVersion3
NameCGC_nameCre-urm-1From_analysisInferred_from_orthology
Sequence_nameCRE04602
Molecular_nameCRE04602
CRE04602.1
RP09506
Other_namecr01.sctg5.wum.477
Public_nameCre-urm-1
SpeciesCaenorhabditis remanei
HistoryVersion_change109 Nov 2007 10:19:26WBPerson1847EventCreated
203 Jul 2008 11:44:58WBPerson4055EventImportedfrom NGASP
Name_changeSequence_nameCRE04602
Other_namecr01.sctg5.wum.477
320 Mar 2018 10:26:11WBPerson4025Name_changeCGC_nameCre-urm-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classurm
RNASeq_FPKMWBls:000000469.0204From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
70.2925From_analysisRNASeq.remanei.WBls:0000004.control_mean
RNASeq.remanei.WBls:0000004.control_median
71.5646From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
WBls:0000024 (51)
WBls:0000027100.387From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
23.4217From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
52.1866From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
54.9574From_analysisRNASeq.remanei.WBls:0000027.control_median
57.7281From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
58.4309From_analysisRNASeq.remanei.WBls:0000027.control_mean
WBls:000003856.8437From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
76.8347From_analysisRNASeq.remanei.WBls:0000038.control_mean
83.242From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
RNASeq.remanei.WBls:0000038.control_median
90.4185From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
WBls:0000041124.013From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
124.798From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
131.422From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
67.4975From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
71.3214From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
73.439From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
98.726From_analysisRNASeq.remanei.WBls:0000041.control_median
98.7485From_analysisRNASeq.remanei.WBls:0000041.control_mean
WBls:0000063 (12)
WBls:000010170.1709From_analysisRNASeq.remanei.total_over_all_stages.control_median
73.7355From_analysisRNASeq.remanei.total_over_all_stages.control_mean
GO_annotation00151239
00151240
OrthologWBGene00185048Caenorhabditis elegansFrom_analysisInparanoid_8
WormBase-Compara
WBGene00149138Caenorhabditis brenneriFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00119557Caenorhabditis japonicaFrom_analysisOMA
Inparanoid_8
WBGene00087417Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00213158Caenorhabditis japonicaFrom_analysisInparanoid_8
WBGene00224317Brugia malayiFrom_analysisWormBase-Compara
WBGene00248006Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00113355Pristionchus pacificusFrom_analysisWormBase-Compara
CBOVI.g4078Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g11388Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g4854Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g9432Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g15300Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g14161Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g2619Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g13597Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g4331Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g439Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00387.g10126Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-urm-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold628.g7356Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00128.g5099Caenorhabditis sinicaFrom_analysisWormBase-Compara
GCK72_010457Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g11753Oscheius tipulaeFrom_analysisWormBase-Compara
chrIII_pilon.g8882Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00264494Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00288692Trichuris murisFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to be involved in tRNA thio-modification. Predicted to be located in cytoplasm. Is an ortholog of C. elegans urm-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCRE04602
Corresponding_transcriptCRE04602.1
Other_sequenceCGC00347_1
CBC12747_1
Experimental_infoExpr_patternExpr1101000
Microarray_resultsGPL14146_CRE04602_188-247_0.958_2_C
GPL14146_CRE04602_205-264_0.958_1_A
GPL14146_CRE04602_4-63_0.814_28_B
MethodGene