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WormBase Tree Display for Gene: WBGene00025067

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Name Class

WBGene00025067SMapS_parentSequencecb25.fpc0045
IdentityVersion2
NameCGC_nameCbr-lgc-47From_analysisInferred_from_orthology
Sequence_nameCBG01898
Molecular_nameCBG01898
CBG01898.1
CBP42786
Other_nameCBG_01898Accession_evidenceNDBHE601451
Public_nameCbr-lgc-47
DB_infoDatabaseNDBlocus_tagCBG_01898
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:54WBPerson1971EventImportedInitial conversion from brigace
221 Apr 2008 17:10:50WBPerson2970Name_changeCGC_nameCbr-lgc-47
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlgc
AlleleWBVar00021879
WBVar00021869
WBVar00069926
WBVar00021884
WBVar00069931
WBVar00021874
RNASeq_FPKMWBls:000000213.6003From_analysisRNASeq.briggsae.WBls:0000002.control_mean
15.2214From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
16.1956From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
9.38391From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
12.1666From_analysisRNASeq.briggsae.WBls:0000002.control_mean
12.3027From_analysisRNASeq.briggsae.WBls:0000002.control_median
7.86536From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:00000030.077291From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
1.05835From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
2.03942From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
0.886623From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
1.00111From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000415.0891From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
15.4598From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
15.8305From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
14.5366From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
15.4698From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
16.6887From_analysisRNASeq.briggsae.WBls:0000004.control_mean
22.5174From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:000002711.8917From_analysisRNASeq.briggsae.WBls:0000027.control_mean
25.944From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
2.85903From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
6.87204From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
16.408From_analysisRNASeq.briggsae.WBls:0000027.control_median
16.6052From_analysisRNASeq.briggsae.WBls:0000027.control_mean
30.7456From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003527.179From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003810.9198From_analysisRNASeq.briggsae.WBls:0000038.control_median
13.0787From_analysisRNASeq.briggsae.WBls:0000038.control_mean
13.4259From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
1.9975From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
28.4778From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
8.41372From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:00000411.14773From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
1.22531From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
1.31748From_analysisRNASeq.briggsae.WBls:0000041.control_median
1.40966From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
1.97871From_analysisRNASeq.briggsae.WBls:0000041.control_mean
4.13215From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
2.38122From_analysisRNASeq.briggsae.WBls:0000041.control_median
2.49896From_analysisRNASeq.briggsae.WBls:0000041.control_mean
3.35278From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
3.72613From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000631.72447From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
2.05643From_analysisRNASeq.briggsae.WBls:0000063.control_mean
2.26964From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
2.68039From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
3.60767From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
2.47501From_analysisRNASeq.briggsae.WBls:0000063.control_median
2.5134From_analysisRNASeq.briggsae.WBls:0000063.control_mean
4.79821From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010113.3504From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
6.87204From_analysisRNASeq.briggsae.total_over_all_stages.control_median
12.9227From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
7.3687From_analysisRNASeq.briggsae.total_over_all_stages.control_median
GO_annotation00128464
00128465
00128466
00128467
00128468
00128469
OrthologWBGene00009799Caenorhabditis elegansFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00063186Caenorhabditis remaneiFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00194337Caenorhabditis brenneriFrom_analysisWormBase-Compara
CBOVI.g3469Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g2119Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g949Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g16079Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g6049Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g19181Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g17066Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g20226Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g7778Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g20071Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00185.g6468Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-lgc-47Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g13604Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00072.g3351Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_01461Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_023461Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g07519Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g2964Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_X0059900Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00224430Brugia malayiFrom_analysisWormBase-Compara
chrX_pilon.g19794Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00128106Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00209424Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00214656Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00241742Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00109439Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00267721Strongyloides rattiFrom_analysisWormBase-Compara
Paralog (104)
Structured_descriptionAutomated_descriptionPredicted to enable extracellular ligand-gated monoatomic ion channel activity and transmembrane signaling receptor activity. Predicted to be involved in monoatomic ion transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans lgc-47.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG01898
Corresponding_CDS_historyCBG01898:bp255
Corresponding_transcriptCBG01898.1
Other_sequence (13)
Experimental_infoExpr_patternExpr1060893
Microarray_resultsGPL8303_CB6_WBGene00025067_A
GPL8303_CB6_WBGene00025067_B
GPL14143_CBG01898_199-258_0.586_91_C
GPL14143_CBG01898_330-389_0.809_2_A
GPL14143_CBG01898_528-587_0.778_15_B
MethodGene