WormBase Tree Display for Gene: WBGene00023939

WBGene00023939 SMap: S_parent: Sequence: cb25.fpc0011a
  Identity: Version: 2
    Name: CGC_name: Cbr-stc-1 From_analysis: Inferred_from_orthology
      Sequence_name: CBG00564
      Molecular_name: CBG00564
        CBG00564.1
        CBP05826
      Other_name: CBG_00564 Accession_evidence: NDB HE600970
      Public_name: Cbr-stc-1
    DB_info: Database: NDB locus_tag CBG_00564
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:51:53 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Sep 2007 17:07:04 WBPerson2970 Name_change: CGC_name: Cbr-stc-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: stc
    RNASeq_FPKM: WBls:0000002 12.2942 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        16.1565 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        16.3823 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        19.7929 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        13.2663 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        14.8243 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        15.4339 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 36.1355 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        37.1567 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        38.178 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
            RNASeq.briggsae.WBls:0000003.control_median
        40.8602 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        48.2672 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 19.0718 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        21.0519 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        23.032 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        18.3846 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        21.2711 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        22.493 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        23.3741 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
      WBls:0000024 (12)
      WBls:0000027 1.06124 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        19.1304 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        3.43509 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        7.87558 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        12.7705 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
        8.10279 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        9.09931 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
      WBls:0000035 16.1287 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 13.5248 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        15.9359 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        16.0562 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        16.1766 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        18.2189 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        3.76766 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
      WBls:0000041 30.9633 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        31.4038 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        31.9856 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        32.385 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        32.5675 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        34.6054 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        31.7108 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        32.1391 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        32.6744 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        34.7958 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
      WBls:0000063 12.3661 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        14.7164 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        16.5983 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        17.1538 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        18.2204 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        20.5347 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        16.7584 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        17.3566 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        17.5593 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 18.2204 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        18.7293 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        18.3446 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        20.1519 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00127275
      00127276
    Ortholog: WBGene00006059 Caenorhabditis elegans From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00053925 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00142705 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00133745 Caenorhabditis japonica From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      CBOVI.g6919 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g9378 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g10697 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g17120 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g21899 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g16757 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g4257 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g7671 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g14207 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g12865 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00104.g4441 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_05422.g19583 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_20389.g26443 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-stc-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g21351 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00685.g14386 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_04606 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_004940 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g10964 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g6175 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_20246700 Caenorhabditis inopinata From_analysis: WormBase-Compara
      WBGene00224610 Brugia malayi From_analysis: WormBase-Compara
      chrII_pilon.g5283 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00211082 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00212221 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00247669 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00108055 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00256035 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00292700 Trichuris muris From_analysis: WormBase-Compara
    Paralog (20)
    Structured_description: Automated_description: Predicted to enable ATP binding activity and ATP-dependent protein folding chaperone. Is an ortholog of C. elegans stc-1. In C. elegans, stc-1 is involved in IRE1-mediated unfolded protein response. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG00564
    Corresponding_CDS_history: CBG00564:bp194
      CBG00564:bp255
    Corresponding_transcript: CBG00564.1
    Other_sequence (65)
  Experimental_info: Expr_pattern: Expr1055940
    Microarray_results: GPL8303_CB6_WBGene00023939_A
      GPL14143_CBG00564_399-458_0.774_26_C
      GPL14143_CBG00564_768-827_0.548_150_B
      GPL14143_CBG00564_1178-1237_0.821_3_A
  Method: Gene