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WormBase Tree Display for Gene: WBGene00021697

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Name Class

WBGene00021697SMapS_parentSequenceY48G9A
IdentityVersion3
NameCGC_namegcn-1Person_evidenceWBPerson644
Sequence_nameY48G9A.3
Molecular_nameY48G9A.3
Y48G9A.3.1
CE54096
Other_nameY48G9A.aCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
Y48G9A.lCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
Y48G9A.mCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
Y48G9A.nCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
Y48G9A.oCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
CELE_Y48G9A.3Accession_evidenceNDBBX284603
Public_namegcn-1
DB_infoDatabaseAceViewgene3D249
WormQTLgeneWBGene00021697
WormFluxgeneWBGene00021697
NDBlocus_tagCELE_Y48G9A.3
PanthergeneCAEEL|WormBase=WBGene00021697|UniProtKB=B3CJ34
familyPTHR23346
NCBIgene190051
RefSeqproteinNM_001381763.1
TREEFAMTREEFAM_IDTF105398
TrEMBLUniProtAccB3CJ34
UniProt_GCRPUniProtAccB3CJ34
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:04WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
215 Sep 2008 11:24:05WBPerson2970Name_changeCGC_namegcn-1
307 May 2008 11:46:03WBPerson1867EventAcquires_mergeWBGene00021695
Acquires_mergeWBGene00021695
WBGene00021696
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classgcn
Allele (932)
StrainWBStrain00034488
WBStrain00027623
RNASeq_FPKM (74)
GO_annotation (13)
Contained_in_operonCEOP3834
OrthologWBGene00035809Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
WormBase-Compara
WBGene00035582Caenorhabditis briggsaeFrom_analysisOrthoMCL
WormBase-Compara
WBGene00062019Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00162691Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00160532Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00130156Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00226941Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g4704Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g15563Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g5836Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g2328Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g11285Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g22651Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g15436Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g15437Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g17592Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g23231Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g23232Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g24012Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g6683Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g362Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g11262Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g13954Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g20341Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g4340Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g3593Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_13817.g24394Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_III.g8545Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_III.g8551Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_III.g8553Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g20151Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00468.g11767Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_00468.g11768Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_05704Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_05709Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_08117Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_011491Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g08019Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g17567Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_30302500Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIII_pilon.g7056Caenorhabditis elegansFrom_analysisWormBase-Compara
chrIII_pilon.g7058Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00062021Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00245097Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00092102Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00258651Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00289222Trichuris murisFrom_analysisWormBase-Compara
SGD:S000003163Saccharomyces cerevisiaeFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
FB:FBgn0287182Drosophila melanogasterFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-040724-264Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:4199Homo sapiensFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:2444248Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1593434Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ParalogWBGene00008422Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00010364Caenorhabditis elegansFrom_analysisPanther
Structured_descriptionConcise_descriptiongcn-1 encodes the C. elegans ortholog of the S. cerevisiae ribosome-associated protein Gcn1p; GCN-1, along with ABCF-3, is required for maintaining the steady-state levels of phosphorylated eIF2alpha, and thus for the translational control of a number of mRNAs; GCN-1 activity is required, in parallel to, or downstream of, the canonical apoptotic pathway, for apoptotic cell death of most somatic cells and germ cells in response to ionizing radiation; in addition, GCN-1 is required for normal growth rates, and spatial organization of germ cells in the gonad; as in S. cerevisiae, GCN-1 physically interacts with ABCF-3, the C. elegans ortholog of budding yeast Gcn20p, and GCN-1 and ABCF-3 are each required for the other's stability; a gcn-1::gfp promoter fusion is expressed in most cells, including germ cells, throughout development.Paper_evidenceWBPaper00045601
Curator_confirmedWBPerson1843
Date_last_updated15 Aug 2014 00:00:00
Automated_descriptionPredicted to enable protein kinase regulator activity. Involved in positive regulation of peptidyl-serine phosphorylation; regulation of apoptotic process; and regulation of translation. Acts upstream of with a positive effect on positive regulation of gene expression. Acts upstream of or within with a negative effect on negative regulation of translation. Predicted to be located in cytosolic ribosome. Expressed in several structures, including body wall musculature; head neurons; hermaphrodite gonad; intestinal cell; and pharyngeal neurons. Is an ortholog of human GCN1 (GCN1 activator of EIF2AK4).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY48G9A.3
Corresponding_CDS_historyY48G9A.3:wp150
Y48G9A.3:wp191
Y48G9A.3:wp237
Y48G9A.3:wp275
Corresponding_transcriptY48G9A.3.1
Other_sequence (91)
Associated_feature (40)
Experimental_infoRNAi_resultWBRNAi00056982Inferred_automaticallyRNAi_primary
WBRNAi00056977Inferred_automaticallyRNAi_primary
WBRNAi00037280Inferred_automaticallyRNAi_primary
WBRNAi00093045Inferred_automaticallyRNAi_primary
WBRNAi00077044Inferred_automaticallyRNAi_primary
WBRNAi00037275Inferred_automaticallyRNAi_primary
WBRNAi00056981Inferred_automaticallyRNAi_primary
Expr_patternExpr11922
Expr11923
Expr1022586
Expr1039504
Expr1160428
Expr2011967
Expr2030204
Drives_constructWBCnstr00019541
Construct_productWBCnstr00019540
Regulate_expr_clusterWBPaper00065578:gcn-1(nc40)_downregulated
WBPaper00065578:gcn-1(nc40)_upregulated
AntibodyWBAntibody00002554
Microarray_results (42)
Expression_cluster (163)
Interaction (150)
Map_infoMapIIIPosition-15.0586Error0.039572
PositivePositive_cloneY48G9AInferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
Reference (11)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene