WormBase Tree Display for Gene: WBGene00021613

WBGene00021613 SMap: S_parent: Sequence: Y47A7
  Identity: Version: 2
    Name: CGC_name: ttc-37 Person_evidence: WBPerson959
            WBPerson27246
      Sequence_name: Y47A7.1
      Molecular_name: Y47A7.1
        Y47A7.1.1
        CE31118
      Other_name: CELE_Y47A7.1 Accession_evidence: NDB BX284605
      Public_name: ttc-37
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:04 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 28 Feb 2017 08:21:36 WBPerson2970 Name_change: CGC_name: ttc-37
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ttc
    Allele (169)
    Strain: WBStrain00003628
    RNASeq_FPKM (74)
    GO_annotation: 00091584
      00091585
      00125902
      00125903
    Ortholog: WBGene00030448 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00052729 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00160929 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00136118 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00098841 Pristionchus pacificus From_analysis: Inparanoid_8
      WBGene00224803 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g347 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g1570 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g16898 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g5184 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g18733 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g1630 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g11637 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g15255 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g9236 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g24389 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00717.g13654 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-Y47A7.1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g13143 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_01327.g20124 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_03889 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_018505 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g14890 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g20191 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_50191510 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrV_pilon.g14194 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00241078 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00304881 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00267250 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00288130 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000006393 Saccharomyces cerevisiae From_analysis: Inparanoid
            Panther
      FB:FBgn0033376 Drosophila melanogaster From_analysis: OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      ZFIN:ZDB-GENE-110125-2 Danio rerio From_analysis: Inparanoid
            OrthoFinder
            Panther
            PhylomeDB
      HGNC:23639 Homo sapiens From_analysis: Inparanoid
            OrthoFinder
            Panther
            PhylomeDB
      MGI:2679923 Mus musculus From_analysis: Inparanoid
            OrthoFinder
            Panther
            PhylomeDB
      RGD:1306062 Rattus norvegicus From_analysis: Inparanoid
            OrthoFinder
            Panther
            PhylomeDB
    Paralog: WBGene00000244 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00003858 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00003885 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00017983 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00018175 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00021444 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00043992 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to be involved in nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'. Predicted to be part of Ski complex. Human ortholog(s) of this gene implicated in trichohepatoenteric syndrome 1. Is an ortholog of human SKIC3 (SKI3 subunit of superkiller complex). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0111415 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:23639)
  Molecular_info: Corresponding_CDS: Y47A7.1
    Corresponding_transcript: Y47A7.1.1
    Other_sequence (19)
    Associated_feature (12)
  Experimental_info: RNAi_result: WBRNAi00056723 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr6986
      Expr1025564
      Expr1039456
      Expr1160192
      Expr2017562
      Expr2035701
    Drives_construct: WBCnstr00004075
      WBCnstr00024480
    Construct_product: WBCnstr00024480
    Microarray_results (16)
    Expression_cluster (74)
    Interaction: WBInteraction000586768
  Map_info: Map: V Position: -2.37617
    Positive: Positive_clone: Y47A7 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene