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WormBase Tree Display for Gene: WBGene00021416

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Name Class

WBGene00021416SMapS_parentSequenceY38F2AL
IdentityVersion3
NameCGC_namemksr-2Paper_evidenceWBPaper00032899
Person_evidenceWBPerson2136
WBPerson711
Sequence_nameY38F2AL.2
Molecular_nameY38F2AL.2
Y38F2AL.2.1
CE21622
Other_nametza-1
Y38F2AL.fCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
CELE_Y38F2AL.2Accession_evidenceNDBBX284604
Public_namemksr-2
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:04WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
208 Jun 2007 15:14:26WBPerson2970Name_changeCGC_nametza-1
319 Oct 2009 17:02:44WBPerson9133Name_changeCGC_namemksr-2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classmksr
Allele (61)
RNASeq_FPKM (74)
GO_annotation (22)
OrthologWBGene00071887Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00036660Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00152082Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00131993Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WBGene00107448Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00164767Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00073477Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00226694Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g11457Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g854Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g9835Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g22204Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g22300Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g2727Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g13252Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g4140Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g6273Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
Cni-mksr-2Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g10774Caenorhabditis tropicalisFrom_analysisWormBase-Compara
FL83_17406Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_016096Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g05470Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g14319Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_40036000Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIV_pilon.g9789Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00241488Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00259511Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00292205Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0261683Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-040718-90Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:28636Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:2387643Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1566122Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ParalogWBGene00019364Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00020100Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
Structured_descriptionConcise_descriptionmkrs-2 encodes an ortholog of human B9D2 (OMIM:611951), paralogous to MKRS-1 and MKS-1; MKRS-2 is required for fully normal foraging behavior, and is redundantly required with NPH-4 for roughly normal foraging, and with both NPH-1 and NPH-4 for cilia formation; MKRS-2 is expressed in most ciliated cells, including amphid, phasmid, and labial-quadrant neurons, in a DAF-19-dependent manner; MKRS-2 forms a complex with MKRS-1 and MKS-1 at the base of cilia, and is coexpressed with these proteins in ciliated sensory neurons; MKRS-2 protein is required for proper localization of MKRS-1 and MKS-1 to the transition zone, and binds MKRS-1 in two-hybrid assays.Paper_evidenceWBPaper00026601
WBPaper00031596
WBPaper00032899
Curator_confirmedWBPerson1843
WBPerson567
Date_last_updated20 Oct 2009 00:00:00
Automated_descriptionInvolved in several processes, including determination of adult lifespan; larval foraging behavior; and non-motile cilium assembly. Located in ciliary basal body; ciliary transition zone; and dendrite terminus. Expressed in neurons. Used to study Joubert syndrome. Human ortholog(s) of this gene implicated in Joubert syndrome. Is an ortholog of human B9D2 (B9 domain containing 2).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoExperimental_modelDOID:0050777Homo sapiensPaper_evidenceWBPaper00060708
Curator_confirmedWBPerson324
Date_last_updated17 May 2022 00:00:00
DOID:0060340
Potential_modelDOID:0050777Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:28636)
Models_disease_assertedWBDOannot00000137
WBDOannot00001195
Molecular_infoCorresponding_CDSY38F2AL.2
Corresponding_transcriptY38F2AL.2.1
Other_sequenceGRC01626_1
GR12635
JI182061.1
Associated_featureWBsf047478
WBsf047505
WBsf667629
WBsf667771
WBsf995657
WBsf1016883
WBsf229802
Experimental_infoRNAi_resultWBRNAi00036859Inferred_automaticallyRNAi_primary
WBRNAi00056042Inferred_automaticallyRNAi_primary
Expr_patternExpr3726
Expr8174
Expr8531
Expr10104
Expr16112
Expr1019578
Expr1159565
Expr2013588
Expr2031821
Drives_constructWBCnstr00007463
WBCnstr00007464
WBCnstr00011630
WBCnstr00013159
WBCnstr00020667
Construct_productWBCnstr00020667
Microarray_results (18)
Expression_cluster (146)
InteractionWBInteraction000032179
WBInteraction000384732
WBInteraction000503538
WBInteraction000507325
WBInteraction000507326
WBInteraction000507327
WBInteraction000513976
WBInteraction000548384
WBInteraction000551361
WBInteraction000556760
Map_infoMapIVPosition-8.28755Error0.046305
PositivePositive_cloneY38F2ALInferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
Reference (19)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene