WormBase Tree Display for Gene: WBGene00020298

WBGene00020298 SMap: S_parent: Sequence: T07A9
  Identity: Version: 2
    Name: CGC_name: uncp-18 Person_evidence: WBPerson260
      Sequence_name: T07A9.10
      Molecular_name: T07A9.10
        T07A9.10.1
        CE17219
      Other_name: CELE_T07A9.10 Accession_evidence: NDB BX284604
      Public_name: uncp-18
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:02 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 12 Jan 2023 20:48:33 WBPerson51134 Name_change: CGC_name: uncp-18
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: uncp
    Allele (37)
    Strain: WBStrain00055173
    RNASeq_FPKM (74)
    GO_annotation (9)
    Ortholog: WBGene00051283 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00155616 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00135188 Caenorhabditis japonica From_analysis: TreeFam
      WBGene00147637 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00064553 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00034298 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      CBOVI.g8486 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP26.g14027 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g2679 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g22244 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g22871 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP38.g19348 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g3106 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g23957 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-T07A9.10 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g10707 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_01309.g20029 Caenorhabditis sinica From_analysis: WormBase-Compara
      GCK72_016309 Caenorhabditis remanei From_analysis: WormBase-Compara
      Sp34_40020600 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g9498 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00117349 Pristionchus pacificus From_analysis: WormBase-Compara
      SGD:S000002571 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040426-2833 Danio rerio From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
      HGNC:11445 Homo sapiens From_analysis: EnsEMBL-Compara
            Panther
            PhylomeDB
      HGNC:11446 Homo sapiens From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
      MGI:107362 Mus musculus From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
      RGD:619968 Rattus norvegicus From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
    Paralog: WBGene00006757 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00009654 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00015130 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00016643 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00016960 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable syntaxin binding activity. Predicted to be involved in intracellular protein transport; neurotransmitter secretion; and vesicle docking involved in exocytosis. Predicted to be located in plasma membrane and secretory granule. Human ortholog(s) of this gene implicated in familial hemophagocytic lymphohistiocytosis 5. Is an ortholog of human STXBP2 (syntaxin binding protein 2) and STXBP3 (syntaxin binding protein 3). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0110925 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:11445)
  Molecular_info: Corresponding_CDS: T07A9.10
    Corresponding_transcript: T07A9.10.1
    Other_sequence: CBC04611_1
    Associated_feature: WBsf645754
      WBsf659873
      WBsf995138
      WBsf227836
      WBsf227837
  Experimental_info: RNAi_result: WBRNAi00052697 Inferred_automatically: RNAi_primary
      WBRNAi00018328 Inferred_automatically: RNAi_primary
      WBRNAi00065636 Inferred_automatically: RNAi_primary
      WBRNAi00110892 Inferred_automatically: RNAi_primary
      WBRNAi00116196 Inferred_automatically: RNAi_primary
      WBRNAi00001397 Inferred_automatically: RNAi_primary
      WBRNAi00116214 Inferred_automatically: RNAi_primary
      WBRNAi00035283 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1020499
      Expr1038843
      Expr1156307
      Expr2005951
      Expr2024168
    Drives_construct: WBCnstr00025235
    Construct_product: WBCnstr00025235
      WBCnstr00043006
      WBCnstr00043008
    Microarray_results (20)
    Expression_cluster (80)
    Interaction: WBInteraction000116025
      WBInteraction000120613
      WBInteraction000262297
      WBInteraction000418215
      WBInteraction000453498
      WBInteraction000466919
      WBInteraction000468400
      WBInteraction000583834
      WBInteraction000584270
  Map_info: Map: IV Position: -26.2101
    Positive: Positive_clone: T07A9 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00066068
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene