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WormBase Tree Display for Gene: WBGene00018643

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Name Class

WBGene00018643SMapS_parentSequenceF49F1
Identity (6)
Gene_infoBiotypeSO:0001217
Gene_classdrd
Allele (50)
RNASeq_FPKM (74)
GO_annotation00093042
00093043
00093044
OrthologWBGene00042152Caenorhabditis briggsaeFrom_analysisOrthoMCL
Inparanoid_8
WormBase-Compara
WBGene00042153Caenorhabditis briggsaeFrom_analysisOrthoMCL
Inparanoid_8
WormBase-Compara
WBGene00042154Caenorhabditis briggsaeFrom_analysisOrthoMCL
Inparanoid_8
WormBase-Compara
WBGene00042151Caenorhabditis briggsaeFrom_analysisOMA
WormBase-Compara
WBGene00153815Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00183773Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
WBGene00071447Caenorhabditis remaneiFrom_analysisInparanoid_8
WormBase-Compara
WBGene00071446Caenorhabditis remaneiFrom_analysisInparanoid_8
WormBase-Compara
CSP26.g9120Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g17148Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g20162Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP39.g10281Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g10282Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g5449Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g5450Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cnig_chr_IV.g15792Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_IV.g15793Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_IV.g15794Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_IV.g15795Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_V.g17488Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g20768Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_01213.g19311Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_04236.g32439Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_05071.g34321Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_05674Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_015768Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_015783Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_015784Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_015786Caenorhabditis remaneiFrom_analysisWormBase-Compara
chrIV_pilon.g10115Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00070780Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00092346Pristionchus pacificusFrom_analysisWormBase-Compara
Paralog (63)
Structured_descriptionAutomated_descriptionInvolved in defense response to Gram-positive bacterium and innate immune response.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF49F1.1
Corresponding_transcriptF49F1.1.1
Other_sequenceNBC01774_1
NB08687
Associated_featureWBsf645906
WBsf996181
WBsf228156
WBsf228157
Experimental_infoRNAi_resultWBRNAi00078259Inferred_automaticallyRNAi_primary
WBRNAi00015337Inferred_automaticallyRNAi_primary
WBRNAi00047876Inferred_automaticallyRNAi_primary
WBRNAi00032555Inferred_automaticallyRNAi_primary
WBRNAi00001965Inferred_automaticallyRNAi_primary
WBRNAi00095432Inferred_automaticallyRNAi_primary
WBRNAi00095424Inferred_automaticallyRNAi_primary
WBRNAi00095411Inferred_automaticallyRNAi_primary
Expr_patternExpr1022463
Expr1151705
Expr2011085
Expr2029321
Drives_constructWBCnstr00026364
Construct_productWBCnstr00026364
Microarray_results (19)
Expression_cluster (260)
InteractionWBInteraction000236426
WBInteraction000292066
WBInteraction000317892
WBInteraction000402983
WBInteraction000455812
WBInteraction000457799
Map_info (3)
ReferenceWBPaper00027722
WBPaper00028482
WBPaper00032370
WBPaper00044557
WBPaper00058665
WBPaper00062322
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene