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WormBase Tree Display for Gene: WBGene00016892

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Name Class

WBGene00016892SMapS_parentSequenceC53A3
IdentityVersion2
NameCGC_namepgph-3Person_evidenceWBPerson1352
Sequence_nameC53A3.2
Molecular_nameC53A3.2
C53A3.2.1
CE16942
Other_nameCELE_C53A3.2Accession_evidenceNDBBX284605
Public_namepgph-3
DB_infoDatabaseAceViewgene5G242
WormQTLgeneWBGene00016892
WormFluxgeneWBGene00016892
NDBlocus_tagCELE_C53A3.2
PanthergeneCAEEL|WormBase=WBGene00016892|UniProtKB=O44538
familyPTHR19288
NCBIgene178964
RefSeqproteinNM_072110.6
TrEMBLUniProtAccO44538
UniProt_GCRPUniProtAccO44538
SpeciesCaenorhabditis elegans
HistoryVersion_change (2)
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpgph
Allele (12)
RNASeq_FPKM (74)
GO_annotation00032788
00032789
00032790
00032791
00122398
OrthologWBGene00058881Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00030926Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00030927Caenorhabditis briggsaeFrom_analysisOrthoMCL
Inparanoid_8
WormBase-Compara
WBGene00127829Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00192707Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00191250Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00193425Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00194445Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00141978Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00183493Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00216900Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00214347Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00210510Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00058880Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00213082Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00208872Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00215695Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00091577Pristionchus pacificusFrom_analysisInparanoid_8
WormBase-Compara
WBGene00106577Pristionchus pacificusFrom_analysisInparanoid_8
WormBase-Compara
CBOVI.g1857Caenorhabditis bovisFrom_analysisWormBase-Compara
CBOVI.g1858Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g14744Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g1517Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g1518Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g16333Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g795Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g796Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g797Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP28.g15755Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g15756Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g14255Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g14256Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g17932Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g15601Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g16122Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g16331Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g16332Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g16333Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g16334Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g16336Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g16337Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g5974Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g3011Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g3012Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g24591Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00026.g1573Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_V.g19707Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp5_scaffold_10455.g40020Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_21707Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_017800Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g10028Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g11554Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g13710Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g13711Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g13712Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g1765Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g4329Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g4330Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g4332Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g4334Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g8544Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_50200100Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_50200310Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrV_pilon.g14307Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00180947Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00214777Caenorhabditis japonicaFrom_analysisWormBase-Compara
SGD:S000002395Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoInspector
SonicParanoid
FB:FBgn0034713Drosophila melanogasterFrom_analysisOrthoFinder
OrthoInspector
Panther
PhylomeDB
FB:FBgn0052487Drosophila melanogasterFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
FB:FBgn0036760Drosophila melanogasterFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
FB:FBgn0052488Drosophila melanogasterFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-080723-69Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-030131-6240Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:30259Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:8909Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1919282Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1914328Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1307773Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1586212Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ParalogWBGene00007548Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00016664Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00019522Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00019604Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00018424Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable phosphatase activity. Predicted to be located in cytoplasm. Is an ortholog of human PDXP (pyridoxal phosphatase) and PGP (phosphoglycolate phosphatase).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC53A3.2
Corresponding_transcriptC53A3.2.1
Other_sequence (61)
Associated_featureWBsf652649
WBsf718314
WBsf1019684
WBsf233721
Experimental_infoRNAi_result (11)
Expr_patternChronogram840
Expr5575
Expr1018417
Expr1037249
Expr1147017
Expr2001873
Expr2020099
Drives_constructWBCnstr00004425
WBCnstr00027722
Construct_productWBCnstr00027722
Microarray_results (12)
Expression_cluster (297)
Interaction (15)
Map_infoMapVPosition-1.00941
PositivePositive_cloneC53A3Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00027108
WBPaper00038491
WBPaper00055090
WBPaper00062352
WBPaper00063033
WBPaper00065341
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene