WormBase Tree Display for Gene: WBGene00016565

WBGene00016565 SMap: S_parent: Sequence: C41D11
  Identity: Version: 2
    Name: CGC_name: sosi-1 Person_evidence (2)
      Sequence_name: C41D11.6
      Molecular_name: C41D11.6
        C41D11.6.1
        CE08663
      Other_name: CELE_C41D11.6 Accession_evidence: NDB BX284601
      Public_name: sosi-1
    DB_info: Database: AceView gene 1F28
        WormQTL gene WBGene00016565
        WormFlux gene WBGene00016565
        NDB locus_tag CELE_C41D11.6
        Panther gene CAEEL|WormBase=WBGene00016565|UniProtKB=O01978
          family PTHR43788
        NCBI gene 183377
        RefSeq protein NM_058975.1
        TREEFAM TREEFAM_ID TF322752
        TrEMBL UniProtAcc O01978
        UniProt_GCRP UniProtAcc O01978
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:57 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 14 Jun 2021 09:34:42 WBPerson1983 Name_change: CGC_name: sosi-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: sosi
    Allele (67)
    Strain: WBStrain00037343
    RNASeq_FPKM (74)
    GO_annotation: 00026362
      00026363
      00026364
      00026365
    Ortholog: WBGene00146873 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00066714 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00041408 Caenorhabditis briggsae From_analysis: Inparanoid_8
      WBGene00140302 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00126877 Caenorhabditis japonica From_analysis: TreeFam
      WBGene00121328 Caenorhabditis japonica From_analysis: TreeFam
      WBGene00119791 Caenorhabditis japonica From_analysis: TreeFam
      WBGene00121567 Caenorhabditis japonica From_analysis: TreeFam
      WBGene00127590 Caenorhabditis japonica From_analysis: TreeFam
      CBOVI.g3731 Caenorhabditis bovis From_analysis: WormBase-Compara
      CBOVI.g3747 Caenorhabditis bovis From_analysis: WormBase-Compara
      CBOVI.g5217 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP31.g14585 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP31.g19846 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP31.g19847 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP31.g2005 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP31.g24545 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP31.g25540 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP31.g6028 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP38.g12637 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g17093 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g20995 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      Cang_2012_03_13_00287.g8538 Caenorhabditis angaria From_analysis: WormBase-Compara
      Pan_g15391 Panagrellus redivivus From_analysis: WormBase-Compara
      Pan_g15399 Panagrellus redivivus From_analysis: WormBase-Compara
      chrI_pilon.g706 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00240861 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00305078 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00258290 Strongyloides ratti From_analysis: WormBase-Compara
    Paralog: WBGene00001016 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00001258 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00004880 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00007329 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00008099 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00010989 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00014208 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00014965 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00016566 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable RNA binding activity. Predicted to be involved in regulatory ncRNA-mediated heterochromatin formation. Predicted to be part of nuclear RNA-directed RNA polymerase complex. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C41D11.6
    Corresponding_transcript: C41D11.6.1
    Associated_feature: WBsf649099
  Experimental_info: RNAi_result: WBRNAi00042289 Inferred_automatically: RNAi_primary
      WBRNAi00003128 Inferred_automatically: RNAi_primary
      WBRNAi00029723 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1016354
      Expr1037104
      Expr1146280
      Expr2001564
      Expr2019785
    Microarray_results (16)
    Expression_cluster (90)
    Interaction (17)
  Map_info: Map: I Position: -1.28113
    Positive: Positive_clone: C41D11 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00055031
    WBPaper00060506
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene