WormBase Tree Display for Gene: WBGene00014965
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WBGene00014965 | SMap | S_parent | Sequence | Y106G6D | ||||||
---|---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | ||||||||
Name | Sequence_name | Y106G6D.5 | ||||||||
Molecular_name | Y106G6D.5a | |||||||||
Y106G6D.5a.1 | ||||||||||
CE50264 | ||||||||||
Y106G6D.5b | ||||||||||
CE50220 | ||||||||||
Y106G6D.5b.1 | ||||||||||
Y106G6D.5c | ||||||||||
Y106G6D.5d | ||||||||||
Other_name | CELE_Y106G6D.5 | Accession_evidence | NDB | BX284601 | ||||||
Public_name | Y106G6D.5 | |||||||||
DB_info | Database | WormQTL | gene | WBGene00014965 | ||||||
NDB | locus_tag | CELE_Y106G6D.5 | ||||||||
Panther | gene | CAEEL|WormBase=Y106G6D.5a|UniProtKB=A0A0K2WNK1 | ||||||||
family | PTHR10887 | |||||||||
NCBI | gene | 13181740 | ||||||||
RefSeq | protein | NR_132563.1 | ||||||||
NM_001383712.1 | ||||||||||
NM_001313461.3 | ||||||||||
NR_132564.1 | ||||||||||
TrEMBL | UniProtAcc | A0A0K2WNK1 | ||||||||
A0A0K2WN06 | ||||||||||
UniProt_GCRP | UniProtAcc | A0A0K2WNK1 | ||||||||
OMIM | gene | 600502 | ||||||||
RNAcentral | URSid | URS000083AAAE | ||||||||
URS00008454B6 | ||||||||||
Species | Caenorhabditis elegans | |||||||||
History | Version_change | 1 | 27 May 2004 15:23:24 | WBPerson1971 | Event | Imported | Initial conversion from Pseudogene class of WS125 | |||
2 | 18 Sep 2014 13:15:09 | WBPerson1983 | Event | Changed_class | Pseudogene | CDS | ||||
Status | Live | |||||||||
Gene_info | Biotype | SO:0001217 | ||||||||
Allele (46) | ||||||||||
RNASeq_FPKM (74) | ||||||||||
GO_annotation | 00000560 | |||||||||
00000561 | ||||||||||
00000562 | ||||||||||
00000563 | ||||||||||
00000564 | ||||||||||
00000565 | ||||||||||
00000566 | ||||||||||
00000567 | ||||||||||
00120999 | ||||||||||
Ortholog (36) | ||||||||||
Paralog | WBGene00001016 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00001258 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||||
WBGene00004880 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||||
WBGene00007329 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||||
WBGene00008099 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||||
WBGene00010989 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||||
WBGene00014208 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||||
WBGene00016565 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||||
WBGene00016566 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||||
Structured_description | Automated_description | Predicted to enable RNA binding activity and transcription termination site sequence-specific DNA binding activity. Predicted to be involved in termination of RNA polymerase II transcription. Predicted to be located in nuclear body. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease axonal type 2S and distal spinal muscular atrophy 1. Is an ortholog of human IGHMBP2 (immunoglobulin mu DNA binding protein 2). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | |||||||||
WBPerson37462 | ||||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
Disease_info | Potential_model | DOID:0111064 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:5542) | |||||
DOID:0110171 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:5542) | |||||||
Molecular_info | Corresponding_CDS | Y106G6D.5a | ||||||||
Y106G6D.5b | ||||||||||
Corresponding_CDS_history | Y106G6D.5:wp101 | |||||||||
Corresponding_transcript | Y106G6D.5c | |||||||||
Y106G6D.5d | ||||||||||
Y106G6D.5a.1 | ||||||||||
Y106G6D.5b.1 | ||||||||||
Corresponding_pseudogene_history | Y106G6D.5a:wp245 | |||||||||
Y106G6D.5b:wp245 | ||||||||||
Other_sequence (29) | ||||||||||
Associated_feature | WBsf649549 | |||||||||
WBsf649550 | ||||||||||
WBsf664838 | ||||||||||
WBsf984918 | ||||||||||
WBsf1010490 | ||||||||||
Experimental_info | RNAi_result | WBRNAi00117028 | Inferred_automatically | RNAi_primary | ||||||
WBRNAi00055254 | Inferred_automatically | RNAi_primary | ||||||||
WBRNAi00002235 | Inferred_automatically | RNAi_primary | ||||||||
WBRNAi00004497 | Inferred_automatically | RNAi_primary | ||||||||
WBRNAi00004496 | Inferred_automatically | RNAi_primary | ||||||||
Expr_pattern | Expr2006987 | |||||||||
Expr2025209 | ||||||||||
Microarray_results (14) | ||||||||||
Expression_cluster (76) | ||||||||||
Map_info | Positive | Positive_clone | Y106G6D | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Interpolated_map_position | I | 4.65979 | ||||||||
Reference | WBPaper00055090 | |||||||||
WBPaper00064339 | ||||||||||
Method | Gene |