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WormBase Tree Display for Gene: WBGene00016440

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Name Class

WBGene00016440SMapS_parentSequenceC35D10
IdentityVersion2
NameCGC_namegipc-1Person_evidenceWBPerson260
Sequence_nameC35D10.2
Molecular_nameC35D10.2
C35D10.2.1
CE01196
Other_nameCELE_C35D10.2Accession_evidenceNDBBX284603
Public_namegipc-1
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:30:57WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
207 Feb 2012 16:30:56WBPerson2970Name_changeCGC_namegipc-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classgipc
Allele (21)
StrainWBStrain00000431
RNASeq_FPKM (74)
OrthologWBGene00061690Caenorhabditis remaneiFrom_analysis (4)
WBGene00037491Caenorhabditis briggsaeFrom_analysis (3)
WBGene00153870Caenorhabditis brenneriFrom_analysis (4)
WBGene00134278Caenorhabditis japonicaFrom_analysis (4)
WBGene00104887Pristionchus pacificusFrom_analysis (3)
WBGene00222876Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g5034Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g6280Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g21910Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g1416Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g1419Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g15234Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g21869Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g17013Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g17020Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g1926Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g2579Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g18002Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g21980Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g4857Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g3011Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00057.g2908Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_III.g10132Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold478.g1800Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00009.g659Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_21474Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_010009Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g03878Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g04812Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g04832Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g21149Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_30240000Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_30249800Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIII_pilon.g7572Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00249385Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00262451Strongyloides rattiFrom_analysisWormBase-Compara
FB:FBgn0010504Drosophila melanogasterFrom_analysis (9)
ZFIN:ZDB-GENE-040426-921Danio rerioFrom_analysis (8)
ZFIN:ZDB-GENE-060726-1Danio rerioFrom_analysis (8)
ZFIN:ZDB-GENE-060616-326Danio rerioFrom_analysis (9)
HGNC:1226Homo sapiensFrom_analysis (8)
HGNC:18177Homo sapiensFrom_analysis (7)
HGNC:18183Homo sapiensFrom_analysis (8)
MGI:1889209Mus musculusFrom_analysis (9)
MGI:1926252Mus musculusFrom_analysis (8)
MGI:2387006Mus musculusFrom_analysis (9)
RGD:68338Rattus norvegicusFrom_analysis (8)
RGD:1560751Rattus norvegicusFrom_analysis (8)
RGD:1563255Rattus norvegicusFrom_analysis (8)
ParalogWBGene00009681Caenorhabditis elegansFrom_analysis (4)
Structured_descriptionAutomated_descriptionExpressed in spermatid. Used to study Parkinson's disease. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 15 and oculopharyngodistal myopathy 2. Human GIPC1 enables signaling receptor binding activity. Is predicted to encode a protein with the following domains: PDZ domain-containing protein GIPC1/2/3; PDZ superfamily; and PDZ domain. Is an ortholog of human GIPC1 (GIPC PDZ domain containing family member 1) and GIPC3 (GIPC PDZ domain containing family member 3).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoExperimental_modelDOID:14330Homo sapiensPaper_evidenceWBPaper00031384
Curator_confirmedWBPerson324
Date_last_updated24 Jul 2013 00:00:00
Potential_modelDOID:0110470Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:18183)
DOID:0081298Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:1226)
Disease_relevanceIn an elegans model of Parkinson''s disease, where human alpha-synuclein was overexpressed, RNA interference studies showed that the elegans gipc-1/GIPC (GAIP-interacting protein, a conserved cellular scaffold-type protein), significantly protected against age- and dose-dependent degeneration in the dopamine neurons of transgenic worms; such models allow the identification of human modifier proteins of alpha-synuclein dependent misfolding and neurodegeneration, these proteins may also be new potential targets for therapeutic intervention.Homo sapiensPaper_evidenceWBPaper00031384
Accession_evidenceOMIM605072
Curator_confirmedWBPerson324
Date_last_updated24 Jul 2013 00:00:00
Models_disease_in_annotationWBDOannot00000214
Molecular_infoCorresponding_CDSC35D10.2
Corresponding_transcriptC35D10.2.1
Other_sequence (16)
Associated_featureWBsf976120
WBsf224818
Experimental_infoRNAi_resultWBRNAi00011661Inferred_automaticallyRNAi_primary
WBRNAi00022568Inferred_automaticallyRNAi_primary
WBRNAi00005097Inferred_automaticallyRNAi_primary
WBRNAi00090599Inferred_automaticallyRNAi_primary
WBRNAi00076199Inferred_automaticallyRNAi_primary
WBRNAi00041983Inferred_automaticallyRNAi_primary
WBRNAi00029578Inferred_automaticallyRNAi_primary
WBRNAi00001337Inferred_automaticallyRNAi_primary
Expr_patternChronogram924
Expr5437
Expr15153
Expr1022698
Expr1145994
Expr2012040
Expr2030276
Drives_constructWBCnstr00002891
WBCnstr00028069
Construct_productWBCnstr00006223
WBCnstr00007333
WBCnstr00028069
Microarray_results (19)
Expression_cluster (288)
Interaction (224)
Map_infoMapIIIPosition-2.41286
PositivePositive_cloneC35D10Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00027342
WBPaper00031384
WBPaper00038491
WBPaper00039525
WBPaper00055090
WBPaper00056589
WBPaper00060732
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene