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WormBase Tree Display for Gene: WBGene00016167

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Name Class

WBGene00016167SMapS_parentSequenceC27F2
IdentityVersion2
NameCGC_namevps-22Person_evidenceWBPerson3188
Sequence_nameC27F2.5
Molecular_nameC27F2.5
C27F2.5.1
CE26875
C27F2.5.2
Other_nameCELE_C27F2.5Accession_evidenceNDBBX284603
Public_namevps-22
DB_infoDatabaseAceViewgene3G52+3G50
3G50
WormQTLgeneWBGene00016167
WormFluxgeneWBGene00016167
NDBlocus_tagCELE_C27F2.5
PanthergeneCAEEL|WormBase=WBGene00016167|UniProtKB=Q18258
familyPTHR12806
NCBIgene175672
RefSeqproteinNM_065651.8
TREEFAMTREEFAM_IDTF105950
TrEMBLUniProtAccQ18258
UniProt_GCRPUniProtAccQ18258
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:30:57WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
226 Feb 2009 16:18:19WBPerson2970Name_changeCGC_namevps-22
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classvps
Allele (30)
RNASeq_FPKM (74)
GO_annotation00060797
00060798
00060799
00060800
00060801
00121861
00121862
Contained_in_operonCEOP3248
OrthologWBGene00061653Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00037666Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00120569Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00149377Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00222696Brugia malayiFrom_analysisWormBase-Compara
CSP21.g6822Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g1533Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g19838Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g19372Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g5305Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g20302Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g1247Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g6193Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP40.g1181Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cni-vps-22Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g14377Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00253.g8026Caenorhabditis sinicaFrom_analysisWormBase-Compara
GCK72_009971Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g03768Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g11146Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_30054500Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIII_pilon.g7603Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00246058Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00206162Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00262489Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00286189Trichuris murisFrom_analysisWormBase-Compara
SGD:S000005923Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
FB:FBgn0260940Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-041114-117Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:17028Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1343161Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1310144Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
Structured_descriptionConcise_descriptionC27F2.5 encodes the C. elegans ortholog of the conserved vacuolar protein sorting protein EAP30/SNF8/VPS22; by homology, the product of C27F2.5 is predicted to be a component of an ESCRT-II complex (Endosomal Sorting Complex Required for Transport) that functions in endosomal transport.Paper_evidenceWBPaper00026641
Curator_confirmedWBPerson1843
Date_last_updated31 Jul 2007 00:00:00
Automated_descriptionPredicted to be involved in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway. Predicted to be part of ESCRT II complex. Expressed in body wall musculature; pharyngeal muscle cell; pharynx; and vulval muscle. Is an ortholog of human SNF8 (SNF8 subunit of ESCRT-II).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC27F2.5
Corresponding_CDS_historyC27F2.5a:wp135
C27F2.5b:wp135
Corresponding_transcriptC27F2.5.1
C27F2.5.2
Other_sequence (54)
Associated_featureWBsf651025
WBsf226616
Experimental_infoRNAi_result (17)
Expr_patternExpr12774
Expr12778
Expr15896
Expr1013359
Expr1036920
Expr1145400
Expr2018014
Expr2036151
Drives_constructWBCnstr00022878
WBCnstr00028279
WBCnstr00042586
Construct_productWBCnstr00022878
WBCnstr00028279
WBCnstr00042586
Microarray_results (34)
Expression_cluster (77)
Interaction (48)
Map_infoMapIIIPosition-2.30024Error0.00462
PositivePositive_cloneC27F2Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
Reference (7)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene