WormBase Tree Display for Gene: WBGene00012777
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WBGene00012777 | SMap | S_parent | Sequence | Y42A5A | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | lact-8 | Person_evidence | WBPerson168 | |||||
Sequence_name | Y42A5A.2 | ||||||||
Molecular_name | Y42A5A.2a | ||||||||
Y42A5A.2a.1 | |||||||||
CE43119 | |||||||||
Y42A5A.2b | |||||||||
CE45998 | |||||||||
Y42A5A.2c | |||||||||
CE46035 | |||||||||
Y42A5A.2b.1 | |||||||||
Y42A5A.2c.1 | |||||||||
Other_name | CELE_Y42A5A.2 | Accession_evidence | NDB | BX284605 | |||||
Public_name | lact-8 | ||||||||
DB_info | Database | AceView | gene | 5L568 | |||||
WormQTL | gene | WBGene00012777 | |||||||
WormFlux | gene | WBGene00012777 | |||||||
NDB | locus_tag | CELE_Y42A5A.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00012777|UniProtKB=Q9XWZ6 | |||||||
family | PTHR46825 | ||||||||
NCBI | gene | 189839 | |||||||
RefSeq | protein | NM_001269357.3 | |||||||
NM_001269359.3 | |||||||||
NM_001269358.3 | |||||||||
TREEFAM | TREEFAM_ID | TF315050 | |||||||
TrEMBL | UniProtAcc | F3Y5Q9 | |||||||
Q9XWZ6 | |||||||||
F3Y5Q8 | |||||||||
UniProt_GCRP | UniProtAcc | Q9XWZ6 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 13 Apr 2007 16:02:30 | WBPerson2970 | Name_change | CGC_name | lact-8 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | lact | ||||||||
Allele (53) | |||||||||
Strain | WBStrain00037741 | ||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog | WBGene00041505 | Caenorhabditis briggsae | From_analysis | Hillier-set | |||||
OrthoMCL | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00066190 | Caenorhabditis remanei | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00144825 | Caenorhabditis brenneri | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00151634 | Caenorhabditis brenneri | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00127591 | Caenorhabditis japonica | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
CBOVI.g1057 | Caenorhabditis bovis | From_analysis | WormBase-Compara | ||||||
CSP21.g3546 | Caenorhabditis parvicauda | From_analysis | WormBase-Compara | ||||||
CSP26.g464 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
CSP28.g4683 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
CSP29.g18229 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
CSP31.g1123 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||||
CSP32.g6694 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
CSP38.g15221 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||||
CSP39.g15850 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
CSP40.g1022 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
Cang_2012_03_13_06081.g20044 | Caenorhabditis angaria | From_analysis | WormBase-Compara | ||||||
Cang_2012_03_13_11116.g23048 | Caenorhabditis angaria | From_analysis | WormBase-Compara | ||||||
Cni-lact-8 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
Csp5_scaffold_00426.g11205 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
FL83_19989 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
GCK72_016620 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
Sp34_50312100 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
chrV_pilon.g15683 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00203679 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
Paralog (2) | |||||||||
Structured_description | Concise_description | lact-8 encodes a beta-lactamase domain-containing protein that contains a predicted transmembrane domain in its N terminus. | Curator_confirmed | WBPerson1843 | |||||
Date_last_updated | 18 Dec 2007 00:00:00 | ||||||||
Automated_description | Enriched in several structures, including ABarpaapap; ABarpaappa; ABarpaappp; anterior hypodermis; and carbon dioxide sensory neurons based on RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-2; skn-1; and glp-1 based on microarray and RNA-seq studies. Is affected by twelve chemicals including levamisole; allantoin; and Sirolimus based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: Beta-lactamase-related; Beta-lactamase; and Beta-lactamase/transpeptidase-like. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y42A5A.2a | |||||||
Y42A5A.2b | |||||||||
Y42A5A.2c | |||||||||
Corresponding_CDS_history | Y42A5A.2:wp195 | ||||||||
Corresponding_transcript | Y42A5A.2a.1 | ||||||||
Y42A5A.2b.1 | |||||||||
Y42A5A.2c.1 | |||||||||
Other_sequence | HBC25388_1 | ||||||||
JI178465.1 | |||||||||
Dviv_isotig29914 | |||||||||
ES743304.1 | |||||||||
Associated_feature | WBsf653076 | ||||||||
WBsf669356 | |||||||||
WBsf1001266 | |||||||||
Experimental_info | RNAi_result | WBRNAi00056428 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00095078 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00020511 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00056425 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00037016 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00037017 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1011809 | ||||||||
Expr1035654 | |||||||||
Expr1159909 | |||||||||
Expr2013000 | |||||||||
Expr2031232 | |||||||||
Drives_construct | WBCnstr00029848 | ||||||||
Construct_product | WBCnstr00029848 | ||||||||
Microarray_results (20) | |||||||||
Expression_cluster (146) | |||||||||
Interaction (18) | |||||||||
Map_info | Map | V | Position | 2.94611 | Error | 0.000565 | |||
Positive | Positive_clone | Y42A5A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |