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WormBase Tree Display for Gene: WBGene00011513

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Name Class

WBGene00011513SMapS_parentSequenceT06C12
IdentityVersion2
NameCGC_namefbxa-197Person_evidenceWBPerson655
Sequence_nameT06C12.4
Molecular_nameT06C12.4
T06C12.4.1
CE16354
Other_nameCELE_T06C12.4Accession_evidenceNDBBX284605
Public_namefbxa-197
DB_infoDatabaseAceViewgene5Q345
WormQTLgeneWBGene00011513
WormFluxgeneWBGene00011513
NDBlocus_tagCELE_T06C12.4
PanthergeneCAEEL|WormBase=WBGene00011513|UniProtKB=O18043
familyPTHR23015
NCBIgene188165
RefSeqproteinNM_074562.4
TREEFAMTREEFAM_IDTF321294
TrEMBLUniProtAccO18043
UniProt_GCRPUniProtAccO18043
SpeciesCaenorhabditis elegans
HistoryVersion_change (2)
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classfbxa
Allele (30)
RNASeq_FPKM (74)
Contained_in_operonCEOP5535
OrthologWBGene00085160Caenorhabditis remaneiFrom_analysisOMA
WBGene00042195Caenorhabditis briggsaeFrom_analysisOMA
WBGene00141230Caenorhabditis brenneriFrom_analysisOMA
WBGene00145440Caenorhabditis brenneriFrom_analysisOMA
WBGene00150411Caenorhabditis brenneriFrom_analysisOMA
WBGene00061145Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00082006Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00139399Caenorhabditis brenneriFrom_analysisInparanoid_8
WBGene00148513Caenorhabditis brenneriFrom_analysisInparanoid_8
WBGene00153900Caenorhabditis brenneriFrom_analysisInparanoid_8
WBGene00146998Caenorhabditis brenneriFrom_analysisInparanoid_8
WBGene00162753Caenorhabditis brenneriFrom_analysisInparanoid_8
WBGene00140743Caenorhabditis brenneriFrom_analysisInparanoid_8
WBGene00147335Caenorhabditis brenneriFrom_analysisInparanoid_8
WBGene00156986Caenorhabditis brenneriFrom_analysisInparanoid_8
WBGene00141506Caenorhabditis brenneriFrom_analysisInparanoid_8
WBGene00157213Caenorhabditis brenneriFrom_analysisInparanoid_8
WBGene00141678Caenorhabditis brenneriFrom_analysisInparanoid_8
WBGene00143630Caenorhabditis brenneriFrom_analysisInparanoid_8
WBGene00027399Caenorhabditis briggsaeFrom_analysisInparanoid_8
WBGene00080375Caenorhabditis remaneiFrom_analysisInparanoid_8
WBGene00084134Caenorhabditis remaneiFrom_analysisInparanoid_8
WBGene00085145Caenorhabditis remaneiFrom_analysisInparanoid_8
WBGene00078863Caenorhabditis remaneiFrom_analysisInparanoid_8
CSP28.g3891Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g12265Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g15813Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP40.g13864Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Csp11.Scaffold629.g9594Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00983.g17309Caenorhabditis sinicaFrom_analysisWormBase-Compara
GCK72_026200Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_026203Caenorhabditis remaneiFrom_analysisWormBase-Compara
chrV_pilon.g16950Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00068224Caenorhabditis remaneiFrom_analysisWormBase-Compara
Paralog (222)
Structured_descriptionAutomated_descriptionEnriched in several structures, including I5 neuron; cholinergic neurons; germ line; germline precursor cell; and head mesodermal cell based on tiling array; RNA-seq; and microarray studies. Is affected by several genes including daf-2; skn-1; and glp-1 based on microarray and RNA-seq studies. Is affected by fourteen chemicals including methylmercuric chloride; manganese chloride; and stavudine based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: Mos1 transposase, HTH domain; FTH domain; HTH domain in Mos1 transposase; Domain of unknown function DUF38/FTH, Caenorhabditis species; and F-box A protein FB224.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDST06C12.4
Corresponding_transcriptT06C12.4.1
Other_sequenceCBC01996_1
CBC02683_1
Associated_featureWBsf662137
WBsf233052
Experimental_infoRNAi_resultWBRNAi00052628Inferred_automaticallyRNAi_primary
WBRNAi00062357Inferred_automaticallyRNAi_primary
WBRNAi00035257Inferred_automaticallyRNAi_primary
WBRNAi00018281Inferred_automaticallyRNAi_primary
Expr_patternExpr1026732
Expr1156233
Expr2011511
Expr2029748
Drives_constructWBCnstr00030597
Construct_productWBCnstr00030597
Microarray_results (15)
Expression_cluster (105)
Interaction (58)
Map_infoMapVPosition9.02871Error0.002877
PositivePositive_cloneT06C12Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene