WormBase Tree Display for Gene: WBGene00011513
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WBGene00011513 | SMap | S_parent | Sequence | T06C12 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | fbxa-197 | Person_evidence | WBPerson655 | |||
Sequence_name | T06C12.4 | ||||||
Molecular_name | T06C12.4 | ||||||
T06C12.4.1 | |||||||
CE16354 | |||||||
Other_name | CELE_T06C12.4 | Accession_evidence | NDB | BX284605 | |||
Public_name | fbxa-197 | ||||||
DB_info | Database | AceView | gene | 5Q345 | |||
WormQTL | gene | WBGene00011513 | |||||
WormFlux | gene | WBGene00011513 | |||||
NDB | locus_tag | CELE_T06C12.4 | |||||
Panther | gene | CAEEL|WormBase=WBGene00011513|UniProtKB=O18043 | |||||
family | PTHR23015 | ||||||
NCBI | gene | 188165 | |||||
RefSeq | protein | NM_074562.4 | |||||
TREEFAM | TREEFAM_ID | TF321294 | |||||
TrEMBL | UniProtAcc | O18043 | |||||
UniProt_GCRP | UniProtAcc | O18043 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | fbxa | ||||||
Allele (30) | |||||||
RNASeq_FPKM (74) | |||||||
Contained_in_operon | CEOP5535 | ||||||
Ortholog | WBGene00085160 | Caenorhabditis remanei | From_analysis | OMA | |||
WBGene00042195 | Caenorhabditis briggsae | From_analysis | OMA | ||||
WBGene00141230 | Caenorhabditis brenneri | From_analysis | OMA | ||||
WBGene00145440 | Caenorhabditis brenneri | From_analysis | OMA | ||||
WBGene00150411 | Caenorhabditis brenneri | From_analysis | OMA | ||||
WBGene00061145 | Caenorhabditis remanei | From_analysis | TreeFam | ||||
WBGene00082006 | Caenorhabditis remanei | From_analysis | TreeFam | ||||
WBGene00139399 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||
WBGene00148513 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||
WBGene00153900 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||
WBGene00146998 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||
WBGene00162753 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||
WBGene00140743 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||
WBGene00147335 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||
WBGene00156986 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||
WBGene00141506 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||
WBGene00157213 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||
WBGene00141678 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||
WBGene00143630 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||
WBGene00027399 | Caenorhabditis briggsae | From_analysis | Inparanoid_8 | ||||
WBGene00080375 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||
WBGene00084134 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||
WBGene00085145 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||
WBGene00078863 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||
CSP28.g3891 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||
CSP29.g12265 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||
CSP29.g15813 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||
CSP40.g13864 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||
Csp11.Scaffold629.g9594 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||
Csp5_scaffold_00983.g17309 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||
GCK72_026200 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||
GCK72_026203 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||
chrV_pilon.g16950 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00068224 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||
Paralog (222) | |||||||
Structured_description | Automated_description | Enriched in several structures, including I5 neuron; cholinergic neurons; germ line; germline precursor cell; and head mesodermal cell based on tiling array; RNA-seq; and microarray studies. Is affected by several genes including daf-2; skn-1; and glp-1 based on microarray and RNA-seq studies. Is affected by fourteen chemicals including methylmercuric chloride; manganese chloride; and stavudine based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: Mos1 transposase, HTH domain; FTH domain; HTH domain in Mos1 transposase; Domain of unknown function DUF38/FTH, Caenorhabditis species; and F-box A protein FB224. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | T06C12.4 | |||||
Corresponding_transcript | T06C12.4.1 | ||||||
Other_sequence | CBC01996_1 | ||||||
CBC02683_1 | |||||||
Associated_feature | WBsf662137 | ||||||
WBsf233052 | |||||||
Experimental_info | RNAi_result | WBRNAi00052628 | Inferred_automatically | RNAi_primary | |||
WBRNAi00062357 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00035257 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00018281 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1026732 | ||||||
Expr1156233 | |||||||
Expr2011511 | |||||||
Expr2029748 | |||||||
Drives_construct | WBCnstr00030597 | ||||||
Construct_product | WBCnstr00030597 | ||||||
Microarray_results (15) | |||||||
Expression_cluster (105) | |||||||
Interaction (58) | |||||||
Map_info | Map | V | Position | 9.02871 | Error | 0.002877 | |
Positive | Positive_clone | T06C12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |