WormBase Tree Display for Gene: WBGene00010896

WBGene00010896 SMap: S_parent: Sequence: M28
  Identity: Version: 3
    Name: CGC_name: snu-13
      Sequence_name: M28.5
      Molecular_name: M28.5
        M28.5.1
        CE02283
      Other_name: phi-9 Person_evidence: WBPerson2582
        CELE_M28.5 Accession_evidence: NDB BX284602
      Public_name: snu-13
    DB_info: Database: AceView gene 2K948
        WormQTL gene WBGene00010896
        WormFlux gene WBGene00010896
        NDB locus_tag CELE_M28.5
        Panther gene CAEEL|WormBase=WBGene00010896|UniProtKB=Q21568
          family PTHR23105
        NCBI gene 174645
        RefSeq protein NM_001393180.1
        SwissProt UniProtAcc Q21568
        TREEFAM TREEFAM_ID TF300184
        UniProt_GCRP UniProtAcc Q21568
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:51 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 17 Mar 2005 13:54:35 WBPerson2970 Name_change: Other_name: phi-9
        3 11 Mar 2021 09:37:10 WBPerson1983 Name_change: CGC_name: snu-13
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: snu
    Allele (16)
    RNASeq_FPKM (74)
    GO_annotation (18)
    Contained_in_operon: CEOP2500
    Ortholog: WBGene00025982 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00053429 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00148866 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00125584 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00097344 Pristionchus pacificus From_analysis: Inparanoid_8
      WBGene00089666 Pristionchus pacificus From_analysis: Inparanoid_8
      WBGene00234316 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g12839 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g7641 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP21.g9092 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g1662 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g12291 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g9168 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g16541 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g16794 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g19176 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g1053 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g17322 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00006.g499 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-M28.5 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g8882 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00248.g7933 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_21940 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_005482 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g14505 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g12553 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_20289800 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrII_pilon.g5786 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00247140 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00259798 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00286709 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000000752 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0286786 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-030131-9670 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040426-879 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:7819 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:893586 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1303103 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1566078 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:2323620 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Paralog: WBGene00004412 Caenorhabditis elegans From_analysis: Panther
      WBGene00004419 Caenorhabditis elegans From_analysis: Panther
      WBGene00009993 Caenorhabditis elegans From_analysis: Panther
      WBGene00012964 Caenorhabditis elegans From_analysis: Inparanoid_8
            Panther
      WBGene00017997 Caenorhabditis elegans From_analysis: Panther
    Structured_description: Automated_description: Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome; maturation of LSU-rRNA; and maturation of SSU-rRNA. Predicted to be located in nucleolus. Predicted to be part of ribonucleoprotein complex. Is an ortholog of human SNU13 (small nuclear ribonucleoprotein 13). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info (4)
  Experimental_info: RNAi_result (11)
    Expr_pattern: Expr1014225
      Expr1034779
      Expr1154736
      Expr2005274
      Expr2023493
    Drives_construct: WBCnstr00031071
    Construct_product: WBCnstr00031071
    Microarray_results (22)
    Expression_cluster (175)
    Interaction (246)
  Map_info: Map: II Position: 3.12292
    Positive: Positive_clone: M28 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00031949
    WBPaper00038491
    WBPaper00049828
    WBPaper00055090
    WBPaper00062599
    WBPaper00063976
    WBPaper00064632
    WBPaper00065012
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene