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WormBase Tree Display for Gene: WBGene00009940

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Name Class

WBGene00009940SMapS_parentSequenceF52F12
Identity (6)
Gene_infoBiotypeSO:0001217
Gene_classstrl
Allele (24)
StrainWBStrain00037510
In_clusterconserved_miRNA_siRNA_cluster
RNASeq_FPKM (74)
GO_annotation00030887
00030888
00030889
00030890
00117496
OrthologWBGene00026613Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
Inparanoid_8
WormBase-Compara
WBGene00160462Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00158395Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00080032Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00155791Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00127049Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00063102Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00124535Caenorhabditis japonicaFrom_analysisInparanoid_8
WBGene00224530Brugia malayiFrom_analysisWormBase-Compara
WBGene00229286Brugia malayiFrom_analysisWormBase-Compara
WBGene00269100Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g12351Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g2189Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g7296Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g7847Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g4526Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g26850Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g8143Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g9507Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g26149Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g20241Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cnig_chr_I.g1342Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g14787Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00070.g3282Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_21893Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_000698Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g08894Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g14571Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g1446Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g17558Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g2669Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_10187800Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrI_pilon.g1932Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00208028Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00237649Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00093127Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00206094Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00273691Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00279741Pristionchus pacificusFrom_analysisWormBase-Compara
ZFIN:ZDB-GENE-001120-3Danio rerioFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
ZFIN:ZDB-GENE-200421-1Danio rerioFrom_analysisHieranoid
Inparanoid
OrthoFinder
HGNC:11359Homo sapiensFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
PhylomeDB
MGI:102760Mus musculusFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
RGD:3770Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
ParalogWBGene00012127Caenorhabditis elegansFrom_analysisTreeFam
WBGene00010505Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00017826Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionF52F12.7 is orthologous to the human gene STEROIDOGENIC ACUTE REGULATORY PROTEIN (STAR; OMIM:600617), which when mutated leads to disease.Curator_confirmedWBPerson1823
WBPerson567
Date_last_updated06 Aug 2004 00:00:00
Automated_descriptionPredicted to enable lipid binding activity. Predicted to be involved in vesicle tethering to endoplasmic reticulum. Predicted to be located in endoplasmic reticulum membrane; endoplasmic reticulum-endosome membrane contact site; and late endosome membrane. Human ortholog(s) of this gene implicated in congenital adrenal hyperplasia. Is an ortholog of human STAR (steroidogenic acute regulatory protein).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0050811Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:11359)
Molecular_infoCorresponding_CDSF52F12.7a
F52F12.7b
Corresponding_CDS_historyF52F12.7:wp192
Corresponding_transcriptF52F12.7a.1
F52F12.7b.1
Other_sequence (17)
Associated_featureWBsf655797
WBsf656811
WBsf656812
WBsf218372
Experimental_infoRNAi_resultWBRNAi00048013Inferred_automaticallyRNAi_primary
WBRNAi00032633Inferred_automaticallyRNAi_primary
Expr_patternExpr1028193
Expr1034331
Expr1151828
Expr2017097
Expr2035233
Drives_constructWBCnstr00031799
Construct_productWBCnstr00031799
Microarray_results (22)
Expression_cluster (135)
InteractionWBInteraction000264141
WBInteraction000354274
WBInteraction000373343
WBInteraction000420659
WBInteraction000459459
WBInteraction000461309
Map_infoMapIPosition4.06833
PositivePositive_cloneF52F12Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00038491
WBPaper00048210
WBPaper00055090
WBPaper00057279
WBPaper00064789
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene