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WormBase Tree Display for Gene: WBGene00009896

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Name Class

WBGene00009896SMapS_parentSequenceCHROMOSOME_IV
IdentityVersion2
NameCGC_namescl-3Person_evidenceWBPerson261
Sequence_nameF49E11.11
Molecular_nameF49E11.11
F49E11.11.1
CE05907
Other_nameCELE_F49E11.11Accession_evidenceNDBBX284604
Public_namescl-3
DB_infoDatabaseAceViewgene4N825
WormQTLgeneWBGene00009896
WormFluxgeneWBGene00009896
NDBlocus_tagCELE_F49E11.11
PanthergeneCAEEL|WormBase=WBGene00009896|UniProtKB=G5EF50
familyPTHR10334
NCBIgene178252
RefSeqproteinNM_070103.5
TREEFAMTREEFAM_IDTF352352
TrEMBLUniProtAccG5EF50
UniProt_GCRPUniProtAccG5EF50
SpeciesCaenorhabditis elegans
HistoryVersion_change (2)
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classscl
Allele (22)
RNASeq_FPKM (74)
GO_annotation00017421
OrthologWBGene00102612Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WBGene00106850Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WBGene00025029Caenorhabditis briggsaeFrom_analysisOrthoMCL
Inparanoid_8
WBGene00074749Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00062714Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WBGene00141707Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WBGene00130259Caenorhabditis japonicaFrom_analysisOMA
WBGene00134113Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00213352Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00211235Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00123757Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00080658Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00133271Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00091771Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00119076Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00101946Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00095165Pristionchus pacificusFrom_analysisOMA
CSP31.g22098Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP38.g19246Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g19247Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g19248Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g462Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g4778Caenorhabditis quiockensisFrom_analysisWormBase-Compara
Cang_2012_03_13_00390.g10160Caenorhabditis angariaFrom_analysisWormBase-Compara
Csp5_scaffold_00973.g17227Caenorhabditis sinicaFrom_analysisWormBase-Compara
GCK72_014483Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g06414Oscheius tipulaeFrom_analysisWormBase-Compara
chrIV_pilon.g12205Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00239490Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00265712Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00301879Trichuris murisFrom_analysisWormBase-Compara
WBGene00301939Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0030562Drosophila melanogasterFrom_analysisInparanoid
OrthoInspector
Panther
SonicParanoid
FB:FBgn0034623Drosophila melanogasterFrom_analysisInparanoid
Panther
SonicParanoid
FB:FBgn0034624Drosophila melanogasterFrom_analysisInparanoid
Panther
SonicParanoid
FB:FBgn0052679Drosophila melanogasterFrom_analysisInparanoid
Panther
SonicParanoid
FB:FBgn0261848Drosophila melanogasterFrom_analysisInparanoid
Panther
SonicParanoid
ZFIN:ZDB-GENE-090612-1Danio rerioFrom_analysisEnsEMBL-Compara
OrthoInspector
Panther
SonicParanoid
HGNC:304Homo sapiensFrom_analysisEnsEMBL-Compara
Inparanoid
SonicParanoid
HGNC:17001Homo sapiensFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoInspector
SonicParanoid
HGNC:18206Homo sapiensFrom_analysisEnsEMBL-Compara
OrthoInspector
Panther
SonicParanoid
HGNC:25248Homo sapiensFrom_analysisEnsEMBL-Compara
OrthoInspector
Panther
HGNC:16249Homo sapiensFrom_analysisEnsEMBL-Compara
OMA
OrthoInspector
Panther
SonicParanoid
HGNC:21245Homo sapiensFrom_analysisOrthoInspector
Panther
SonicParanoid
MGI:1916536Mus musculusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoInspector
MGI:1921366Mus musculusFrom_analysisOrthoInspector
Panther
SonicParanoid
MGI:1926142Mus musculusFrom_analysisEnsEMBL-Compara
OrthoInspector
Panther
MGI:3620621Mus musculusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoInspector
MGI:3650937Mus musculusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoInspector
Panther
RGD:619846Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
RGD:620860Rattus norvegicusFrom_analysisEnsEMBL-Compara
Panther
SonicParanoid
RGD:1304760Rattus norvegicusFrom_analysisOrthoInspector
Panther
SonicParanoid
RGD:1305978Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoInspector
SonicParanoid
RGD:1309577Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoInspector
Panther
SonicParanoid
RGD:1564813Rattus norvegicusFrom_analysisEnsEMBL-Compara
Panther
SonicParanoid
RGD:1305296Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
Panther
SonicParanoid
RGD:1310205Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoInspector
RGD:1563000Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoInspector
Paralog (33)
Structured_descriptionConcise_descriptionscl-3 encodes a predicted extracellular protein that is a member of the C. elegans family of SCP/TAPS domain-containing proteins.Curator_confirmedWBPerson1843
Date_last_updated26 Mar 2008 00:00:00
Automated_descriptionPredicted to be located in extracellular space. Expressed in g1AL; g1AR; g1P; g2L; and g2R. Is an ortholog of human GLIPR1 (GLI pathogenesis related 1) and R3HDML (R3H domain containing like).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF49E11.11
Corresponding_transcriptF49E11.11.1
Other_sequenceCJC05071_1
CJC05568_1
CR07651
CJC00015_3
CJC02065_1
CJC00015_2
CRC01268_1
Acan_isotig07253
CJC07783_1
CJC04091_1
Associated_feature (5)
Experimental_infoRNAi_resultWBRNAi00015307Inferred_automaticallyRNAi_primary
WBRNAi00032529Inferred_automaticallyRNAi_primary
WBRNAi00047839Inferred_automaticallyRNAi_primary
Expr_patternExpr10172
Expr1012647
Expr1151673
Expr2015639
Expr2033874
Drives_constructWBCnstr00015503
WBCnstr00031834
Construct_productWBCnstr00031834
Microarray_results (17)
Expression_cluster (169)
Interaction (11)
Map_infoMapIVPosition7.66415Error0.012677
PositivePositive_cloneF49E11Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00038491
WBPaper00041256
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene