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WormBase Tree Display for Gene: WBGene00009891

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Name Class

WBGene00009891SMapS_parentSequenceF49E11
IdentityVersion2
NameCGC_namescl-10Person_evidenceWBPerson261
Sequence_nameF49E11.5
Molecular_nameF49E11.5
F49E11.5.1
CE05901
Other_nameCELE_F49E11.5Accession_evidenceNDBBX284604
Public_namescl-10
DB_infoDatabaseAceViewgene4N813
WormQTLgeneWBGene00009891
WormFluxgeneWBGene00009891
NDBlocus_tagCELE_F49E11.5
PanthergeneCAEEL|WormBase=WBGene00009891|UniProtKB=Q20609
familyPTHR10334
NCBIgene186049
RefSeqproteinNM_070097.2
TREEFAMTREEFAM_IDTF352352
TrEMBLUniProtAccQ20609
UniProt_GCRPUniProtAccQ20609
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:50WBPerson1971EventImportedInitial conversion from CDS class of WS125
207 Nov 2007 11:51:23WBPerson2970Name_changeCGC_namescl-10
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classscl
Allele (29)
RNASeq_FPKM (74)
GO_annotation00068519
OrthologWBGene00074497Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00062711Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00160625Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WBGene00102612Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00091771Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00106850Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00119076Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00101946Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00095165Pristionchus pacificusFrom_analysisInparanoid_8
CSP21.g2055Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g12831Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP31.g21501Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP38.g19244Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g19245Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g19250Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g460Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g4780Caenorhabditis quiockensisFrom_analysisWormBase-Compara
Cnig_chr_II.g4676Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold587.g4928Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00041.g2177Caenorhabditis sinicaFrom_analysisWormBase-Compara
Pan_g6710Panagrellus redivivusFrom_analysisWormBase-Compara
WBGene00239490Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00301879Trichuris murisFrom_analysisWormBase-Compara
WBGene00301939Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0030562Drosophila melanogasterFrom_analysisInparanoid
OrthoInspector
Panther
SonicParanoid
FB:FBgn0034623Drosophila melanogasterFrom_analysisInparanoid
Panther
SonicParanoid
FB:FBgn0034624Drosophila melanogasterFrom_analysisInparanoid
Panther
SonicParanoid
FB:FBgn0052679Drosophila melanogasterFrom_analysisInparanoid
Panther
SonicParanoid
FB:FBgn0261848Drosophila melanogasterFrom_analysisInparanoid
Panther
SonicParanoid
ZFIN:ZDB-GENE-090612-1Danio rerioFrom_analysisEnsEMBL-Compara
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-110309-2Danio rerioFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoInspector
SonicParanoid
HGNC:304Homo sapiensFrom_analysisEnsEMBL-Compara
Inparanoid
SonicParanoid
HGNC:17001Homo sapiensFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoInspector
SonicParanoid
HGNC:8946Homo sapiensFrom_analysisEnsEMBL-Compara
OrthoInspector
Panther
SonicParanoid
HGNC:18206Homo sapiensFrom_analysisEnsEMBL-Compara
OrthoInspector
Panther
SonicParanoid
HGNC:25248Homo sapiensFrom_analysisEnsEMBL-Compara
OrthoInspector
Panther
HGNC:16249Homo sapiensFrom_analysisEnsEMBL-Compara
OrthoInspector
Panther
SonicParanoid
HGNC:21245Homo sapiensFrom_analysisOrthoInspector
Panther
SonicParanoid
MGI:102553Mus musculusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
PhylomeDB
MGI:102552Mus musculusFrom_analysisEnsEMBL-Compara
Inparanoid
PhylomeDB
MGI:98815Mus musculusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
PhylomeDB
MGI:1916536Mus musculusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoInspector
MGI:1921366Mus musculusFrom_analysisOrthoInspector
Panther
SonicParanoid
MGI:1926142Mus musculusFrom_analysisEnsEMBL-Compara
OrthoInspector
Panther
MGI:3620621Mus musculusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoInspector
MGI:3650937Mus musculusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoInspector
Panther
RGD:619846Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
RGD:620860Rattus norvegicusFrom_analysisEnsEMBL-Compara
Panther
SonicParanoid
RGD:1304760Rattus norvegicusFrom_analysisOrthoInspector
Panther
SonicParanoid
RGD:1305978Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoInspector
SonicParanoid
RGD:1309577Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoInspector
Panther
SonicParanoid
RGD:1564813Rattus norvegicusFrom_analysisEnsEMBL-Compara
Panther
SonicParanoid
RGD:621653Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoInspector
PhylomeDB
RGD:1305296Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
Panther
SonicParanoid
RGD:1310205Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
OrthoInspector
RGD:1563000Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoInspector
RGD:1590757Rattus norvegicusFrom_analysisEnsEMBL-Compara
Inparanoid
PhylomeDB
Paralog (32)
Structured_descriptionConcise_descriptionscl-10 encodes a predicted extracellular protein that is a member of the C. elegans family of SCP/TAPS domain-containing proteins.Curator_confirmedWBPerson1843
Date_last_updated26 Mar 2008 00:00:00
Automated_descriptionPredicted to be located in extracellular space. Is an ortholog of several human genes including CRISPLD1 (cysteine rich secretory protein LCCL domain containing 1); GLIPR1 (GLI pathogenesis related 1); and PI15 (peptidase inhibitor 15).Paper_evidenceWBPaper00065943
Curator_confirmed (2)
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF49E11.5
Corresponding_transcriptF49E11.5.1
Other_sequenceTcol_isotig23698
Tcol_isotig24109
Experimental_infoRNAi_resultWBRNAi00032534Inferred_automaticallyRNAi_primary
WBRNAi00047844Inferred_automaticallyRNAi_primary
WBRNAi00015311Inferred_automaticallyRNAi_primary
Expr_patternExpr1019789
Expr1151677
Expr2015625
Drives_constructWBCnstr00031839
Construct_productWBCnstr00031839
Microarray_results (19)
Expression_cluster (66)
InteractionWBInteraction000122977
WBInteraction000123211
WBInteraction000331089
WBInteraction000331090
WBInteraction000360393
WBInteraction000360793
WBInteraction000428854
WBInteraction000433165
Map_infoMapIVPosition7.41296Error0.04953
PositivePositive_cloneF49E11Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00038491
WBPaper00055090
WBPaper00062663
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene