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WormBase Tree Display for Gene: WBGene00008033

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Name Class

WBGene00008033SMapS_parentSequenceC39E9
IdentityVersion2
Name (5)
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:48WBPerson1971EventImportedInitial conversion from CDS class of WS125
204 Jun 2013 14:47:04WBPerson2970Name_changeCGC_namespin-2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classspin
Allele (40)
StrainWBStrain00032395
RNASeq_FPKM (74)
GO_annotation00061613
00061614
00061615
00115996
00115997
OrthologWBGene00114622Pristionchus pacificusFrom_analysisOMA
WBGene00062723Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00025016Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00149383Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00140922Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00129551Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00231811Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g8971Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g1222Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g9686Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g15250Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g13812Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g6972Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g26735Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g14397Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g4901Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g1346Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g2353Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_08420.g21496Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-spin-2Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold587.g4911Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00041.g2191Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_19432Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_014491Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g07905Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g13761Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g14713Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_40145700Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIV_pilon.g12214Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00217385Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00217794Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00242888Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00092539Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00097308Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00097312Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00097317Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00097318Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00103533Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00103648Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00105918Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00109522Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00110333Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00110468Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00111487Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00116134Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00275615Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00282259Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00265266Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00297162Trichuris murisFrom_analysisWormBase-Compara
WBGene00299809Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0086676Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-030131-5843Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-060531-7Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-020228-1Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
Panther
PhylomeDB
SonicParanoid
HGNC:30621Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:26992Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:28433Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1920908Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
OMA
OrthoFinder
Panther
PhylomeDB
MGI:2384936Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
OMA
OrthoFinder
Panther
PhylomeDB
RGD:1305613Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
RGD:1561884Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
ParalogWBGene00007549Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00008598Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00013739Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be located in membrane. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 115. Is an ortholog of human SPNS1 (SPNS lysolipid transporter 1, lysophospholipid); SPNS2 (SPNS lysolipid transporter 2, sphingosine-1-phosphate); and SPNS3 (SPNS lysolipid transporter 3, sphingosine-1-phosphate (putative)).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0111643Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:26992)
Molecular_infoCorresponding_CDSC39E9.10
Corresponding_transcriptC39E9.10.1
Other_sequenceES565464.1
HGC02054_1
TSC11110_1
FD516436.1
CSC01279_1
Associated_featureWBsf660867
WBsf660868
WBsf718221
WBsf229383
Experimental_infoRNAi_result (6)
Expr_patternExpr1010809
Expr1033491
Expr1146206
Expr2016058
Expr2034293
Drives_constructWBCnstr00033290
Construct_productWBCnstr00033290
Microarray_results (20)
Expression_cluster (136)
InteractionWBInteraction000033876
WBInteraction000046337
WBInteraction000227854
WBInteraction000280589
WBInteraction000580571
Map_infoMapIVPosition7.8248
PositivePositive_cloneC39E9Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00038491
WBPaper00055090
WBPaper00058991
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene