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WormBase Tree Display for Gene: WBGene00007687

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Name Class

WBGene00007687SMapS_parentSequenceC18E9
IdentityVersion1
NameSequence_nameC18E9.7
Molecular_nameC18E9.7
C18E9.7.1
CE52583
Other_nameCELE_C18E9.7Accession_evidenceNDBBX284602
Public_nameC18E9.7
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:48WBPerson1971EventImportedInitial conversion from CDS class of WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (46)
RNASeq_FPKM (74)
OrthologWBGene00053260Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00026128Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00150550Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00127692Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00117596Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WormBase-Compara
CBOVI.g7800Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g4086Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g12506Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g8984Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g20197Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g4259Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g9366Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g21058Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g27218Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g27232Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g3338Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g1005Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cni-C18E9.7Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g20717Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00048.g2508Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_09282Caenorhabditis latensFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g09316Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g18112Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_20305900Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrII_pilon.g5384Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00216219Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00267786Strongyloides rattiFrom_analysisWormBase-Compara
HGNC:11975Homo sapiensFrom_analysisEnsEMBL-Compara
OrthoFinder
HGNC:11976Homo sapiensFrom_analysisEnsEMBL-Compara
Panther
MGI:1932137Mus musculusFrom_analysisEnsEMBL-Compara
Panther
ParalogWBGene00002915Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00011326Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00017013Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00020516Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionEnriched in arcade cell; excretory gland cell; pharyngeal muscle cell; and sensory neurons based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; and RNA-seq studies. Is affected by sixteen chemicals including 1-methylnicotinamide; D-glucose; and stavudine based on RNA-seq and microarray studies. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome and vesicoureteral reflux. Human TNXB enables collagen fibril binding activity. Is predicted to encode a protein with the following domains: Fibronectin type III superfamily; TM proximal of protein tyrosine phosphatase, receptor type J; PTPRJ, transmembrane domain; Fibronectin type III; Immunoglobulin-like fold; and Fibronectin type III domain. Is an ortholog of human TNXA (tenascin XA (pseudogene)) and TNXB (tenascin XB).Paper_evidenceWBPaper00065943
Curator_confirmed (2)
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:9620Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:11976)
DOID:13359Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:11976)
Molecular_infoCorresponding_CDSC18E9.7
Corresponding_CDS_historyC18E9.7:wp263
Corresponding_transcriptC18E9.7.1
Other_sequenceAS08763
ACC05160_1
MHC09111_1
ACC34413_1
MH10960
ASC04679_1
FC551183.1
FC551769.1
JI212309.1
Acan_isotig14345
Associated_featureWBsf665870
WBsf665871
WBsf717750
WBsf988890
WBsf988891
WBsf1012779
WBsf1012780
WBsf223579
Experimental_infoRNAi_resultWBRNAi00011009Inferred_automaticallyRNAi_primary
WBRNAi00081689Inferred_automaticallyRNAi_primary
WBRNAi00040956Inferred_automaticallyRNAi_primary
Expr_patternExpr1016580
Expr1033322
Expr1144999
Expr2000984
Expr2019203
Drives_constructWBCnstr00033554
Construct_productWBCnstr00033554
Microarray_results (19)
Expression_cluster (184)
Interaction (56)
Map_infoPositivePositive_cloneC18E9Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionII0.946824
ReferenceWBPaper00053423
MethodGene