WormBase Tree Display for Gene: WBGene00007110

WBGene00007110 SMap: S_parent: Sequence: B0035
  Identity: Version: 2
    Name: CGC_name: leo-1 Person_evidence: WBPerson634
      Sequence_name: B0035.11
      Molecular_name: B0035.11
        B0035.11.1
        CE05166
      Other_name: CELE_B0035.11 Accession_evidence: NDB BX284604
      Public_name: leo-1
    DB_info: Database: AceView gene 4M94
        WormQTL gene WBGene00007110
        WormFlux gene WBGene00007110
        NDB locus_tag CELE_B0035.11
        Panther gene CAEEL|WormBase=WBGene00007110|UniProtKB=Q17431
          family PTHR23146
        NCBI gene 178052
        RefSeq protein NM_069734.5
        SwissProt UniProtAcc Q17431
        TREEFAM TREEFAM_ID TF321961
        UniProt_GCRP UniProtAcc Q17431
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:47 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 10 Mar 2014 11:27:18 WBPerson2970 Name_change: CGC_name: leo-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: leo
    Allele (30)
    Strain: WBStrain00037425
    RNASeq_FPKM (74)
    GO_annotation: 00058061
      00058062
      00058063
      00058064
      00058065
      00058066
      00058067
      00058068
      00115322
      00115323
    Contained_in_operon: CEOP4440
    Ortholog: WBGene00062573 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00028410 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00157107 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00221954 Brugia malayi From_analysis: WormBase-Compara
      CSP21.g7928 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g19359 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g2389 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g6335 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g11584 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g3509 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g6839 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g29280 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g5615 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g19565 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-leo-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g8077 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00641.g13906 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_21438 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_014102 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g10319 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g13036 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_40319910 Caenorhabditis inopinata From_analysis: WormBase-Compara
      Sp34_40319920 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g11831 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00182907 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00217648 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00243490 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00260833 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00289445 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000005649 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      FB:FBgn0019637 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040426-2435 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:30401 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:2685031 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1549772 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Concise_description: leo-1 encodes the C. elegans ortholog of mammalian and Saccharomyces cerevisiae LEO1 that is a member of the PAF1 (Polymerase-Associated Factor 1) complex; by homology LEO-1 is predicted to function in the regulation of transcription. Curator_confirmed: WBPerson1843
          Date_last_updated: 23 Mar 2014 00:00:00
      Automated_description: Predicted to enable RNA polymerase II C-terminal domain phosphoserine binding activity. Predicted to be involved in positive regulation of transcription elongation by RNA polymerase II. Located in nucleus. Is an ortholog of human LEO1 (LEO1 homolog, Paf1/RNA polymerase II complex component). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: B0035.11
    Corresponding_transcript: B0035.11.1
    Other_sequence (56)
    Associated_feature: WBsf230867
  Experimental_info: RNAi_result (50)
    Expr_pattern: Expr11680
      Expr1025408
      Expr1033059
      Expr1142876
      Expr2013047
      Expr2031279
    Drives_construct: WBCnstr00019254
      WBCnstr00019255
      WBCnstr00019259
      WBCnstr00033990
    Construct_product: WBCnstr00019254
      WBCnstr00019255
      WBCnstr00019259
      WBCnstr00033990
    Antibody: WBAntibody00002518
    Microarray_results (21)
    Expression_cluster (96)
    Interaction (80)
  Map_info: Map: IV Position: 4.95929
    Positive: Positive_clone: B0035 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00045133
    WBPaper00055090
    WBPaper00059048
    WBPaper00063228
    WBPaper00063237
    WBPaper00063960
    WBPaper00065308
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene