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WormBase Tree Display for Gene: WBGene00006913

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Name Class

WBGene00006913SMapS_parentSequenceT01H3
IdentityVersion2
NameCGC_namevha-4
Sequence_nameT01H3.1
Molecular_name (3)
Other_nameCELE_T01H3.1Accession_evidenceNDBBX284602
Public_namevha-4
DB_infoDatabaseAceViewgene2I168
WormQTLgeneWBGene00006913
WormFluxgeneWBGene00006913
NDBlocus_tagCELE_T01H3.1
PanthergeneCAEEL|WormBase=WBGene00006913|UniProtKB=G5EDB8
familyPTHR10263
NCBIgene174272
RefSeqproteinNM_063258.9
SwissProtUniProtAccG5EDB8
TREEFAMTREEFAM_IDTF314946
UniProt_GCRPUniProtAccG5EDB8
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:43WBPerson1971EventImportedInitial conversion from geneace
215 Jun 2006 16:05:27WBPerson2970EventAcquires_mergeWBGene00011347
Acquires_mergeWBGene00011347
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classvha
Allele (11)
Legacy_information[Oka T, Yamamoto R, Futai M] vha for Vacuolar-type H+ ATPase. Encodes 23kD proteolipid. vha-4::GFP strongly expressed in excretory cell, rectum and two post-anal cells. Predicted gene T01H3.1.
RNASeq_FPKM (74)
GO_annotation00013678
00013679
00013680
00013681
00013682
00114995
00114996
00114997
Contained_in_operonCEOP2316
OrthologWBGene00057709Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00026180Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00155686Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00178237Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00233944Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g6626Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g3108Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g9717Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g14611Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g20145Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g14950Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g9674Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g7654Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g5196Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g25533Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g9953Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g17081Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00302.g8822Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_22214.g26807Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-vha-4Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold531.g3167Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_01378.g20500Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_06963Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_005687Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g11946Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g6952Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_20147400Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrII_pilon.g5121Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00247288Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00093253Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00274917Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00279507Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00259677Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00268084Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00293141Trichuris murisFrom_analysisWormBase-Compara
SGD:S000001068Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
FB:FBgn0262514Drosophila melanogasterFrom_analysisEnsEMBL-Compara
OrthoFinder
OrthoInspector
Panther
PhylomeDB
FB:FBgn0028662Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-030131-443Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:861Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1890510Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ParalogWBGene00006910Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00006911Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00006912Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionvha-4 encodes an ortholog of subunit c'' of the membrane-bound (V0)domain of vacuolar proton-translocating ATPase (V-ATPase); VHA-4 is apredicted V-ATPase transmembrane rotor component; VHA-4 is paralogous tothe c subunits VHA-1/-2/-3, and is predicted to help carry protons fromthe cytosol to a-subunits (VHA-5, VHA-6, VHA-7, or UNC-32) fortransmembrane export; VHA-4 is required for ovulation and embryogenesis,since vha-4(RNAi) animals are sterile with polyploid, unmatured oocytesand dead progeny; VHA-4 is required for alae formation, like the V0subunits VHA-1 and VHA-5, but not like the V1 subunits VHA-8 or VHA-13;vha-4 is expressed in the excretory cell, the rectum, and a pair ofcells near the anus.Paper_evidenceWBPaper00002899
WBPaper00004341
WBPaper00027697
WBPaper00028773
WBPaper00028774
WBPaper00028775
Curator_confirmedWBPerson48
WBPerson567
Date_last_updated19 Nov 2006 00:00:00
Automated_descriptionPredicted to enable proton transmembrane transporter activity. Involved in embryo development. Predicted to be located in membrane. Predicted to be part of proton-transporting two-sector ATPase complex, proton-transporting domain. Expressed in excretory cell and rectum. Is an ortholog of human ATP6V0B (ATPase H+ transporting V0 subunit b).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDST01H3.1
Corresponding_transcriptT01H3.1.1
Other_sequence (73)
Associated_featureWBsf650276
WBsf650277
WBsf665747
WBsf665748
WBsf988587
WBsf223415
Experimental_infoRNAi_result (20)
Expr_patternExpr1400
Expr1462
Expr1016340
Expr1032930
Expr1155804
Expr2017990
Expr2036126
Drives_constructWBCnstr00007708
WBCnstr00010291
WBCnstr00034102
Construct_productWBCnstr00010291
WBCnstr00034102
Microarray_results (22)
Expression_cluster (109)
Interaction (49)
Map_infoMapIIPosition0.595594Error0.001171
PositivePositive_cloneT01H3Person_evidenceWBPerson5079
WBPerson5074
Author_evidenceYamamoto R
Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
Reference (13)
RemarkData extracted from Oka et al. (1997)
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene