WormBase Tree Display for Sequence: T01H3
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| T01H3 | DNA | T01H3 | 21868 | |||
|---|---|---|---|---|---|---|
| SMap | S_child | Gene_child (11) | ||||
| CDS_child (169) | ||||||
| Transcript (11) | ||||||
| Nongenomic | yk240h2 | 426 | 2767 | |||
| PCR_product (15) | ||||||
| Allele (342) | ||||||
| Oligo_set | Aff_T01H3.1 | 8771 | 7916 | |||
| Aff_T01H3.2 | 4618 | 3806 | ||||
| Aff_T01H3.3 | 1550 | 739 | ||||
| Aff_T01H3.4 | 11332 | 12027 | ||||
| Aff_T01H3.5 | 9277 | 9921 | ||||
| Feature_object (365) | ||||||
| Feature_data | T01H3:Polysome | 1 | 21868 | |||
| T01H3:TranscriptionallyActiveRegion | 1 | 21868 | ||||
| T01H3:ChIPSeqTF | 1 | 21868 | ||||
| T01H3:TRF | 1 | 21868 | ||||
| T01H3:Dust | 1 | 21868 | ||||
| T01H3:inverted | 1 | 21868 | ||||
| Homol_data (17) | ||||||
| Structure | From | Source | CHROMOSOME_II | |||
| Overlap_right | ZK675 | 21768 | ||||
| Overlap_left | T09A5 | |||||
| Clone_left_end | T01H3 | 1 | ||||
| C26C6 | 21768 | |||||
| Clone_right_end | T09A5 | |||||
| DB_info | Database | EMBL | NDB_AC | Z68317 | ||
| NDB_SV | Z68317.3 | |||||
| DB_remark | [100415] Sequence correction: deletion -1 bases agctgcaaGgcggatcc @ 785 | |||||
| [121025] Sequence correction WBsf268172 : Deletion T-1 bases @ 9206 | ||||||
| Keyword | HTG | |||||
| EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
| Origin | From_author | Burton J | ||||
| From_laboratory | HX | |||||
| Date_directory | 100415 | |||||
| Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00000001 | |||||
| Visible | Clone | T01H3 | ||||
| Properties | Genomic_canonical | |||||
| Checksum | MD5 | 55ae53a7547a09fe9ef65daf6f786c73 | ||||
| Status | Finished | 14 Jul 1995 00:00:00 | ||||
| Submitted | 22 Dec 1995 00:00:00 | |||||
| Annotated | 21 Dec 1995 00:00:00 | |||||
| Map | Sequence-II | Ends | Left | 4670 | ||
| Right | 4695 | |||||
| Interpolated_map_position | II | 0.598404 | ||||
| Assembly_tags | annotation | 1 | 4 | left end of T01H3 | ||
| 8319 | 8321 | mis-ligation | ||||
| 12858 | 12858 | mutation on term | ||||
| 13231 | 13231 | This is a false join between the 2 contigs across a gap. This gap comprises part of a tandem repeat. We can see a number of different units in this repeat. The most obvious are unit 1 35bp unit 2 26bp These 2 units are repeated in various order across the region and are interspersed with other smaller repeated motifs Restriction digest and pcr data across the area both suggest a further 200bp missing. Primary analysis suggests that this repetitive region is not coding, so no further work is being planned to complete the region. | ||||
| 15238 | 15238 | Missing base | ||||
| 21768 | 21771 | left end of ZK675 | ||||
| 21865 | 21868 | end of t01h3 finishing bit | ||||
| Method | Genomic_canonical |
