Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Gene: WBGene00006408

expand all nodes | collapse all nodes | view schema

Name Class

WBGene00006408EvidenceCGC_data_submission
SMapS_parentSequenceT14G12
IdentityVersion1
NameCGC_nametag-18Person_evidenceWBPerson201
Sequence_nameT14G12.3
Molecular_nameT14G12.3
T14G12.3.1
CE04964
Other_nameCELE_T14G12.3Accession_evidenceNDBBX284606
Public_nametag-18
DB_infoDatabaseAceViewgeneXE350
WormQTLgeneWBGene00006408
WormFluxgeneWBGene00006408
NDBlocus_tagCELE_T14G12.3
NCBIgene180662
RefSeqproteinNM_076241.10
TREEFAMTREEFAM_IDTF353342
TrEMBLUniProtAccQ22508
UniProt_GCRPUniProtAccQ22508
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:40WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classtag
Allele (40)
StrainWBStrain00003306
WBStrain00035574
WBStrain00035577
WBStrain00035726
RNASeq_FPKM (74)
OrthologWBGene00051927Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00034832Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00138855Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00097050Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00129054Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00226062Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g2448Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g917Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g12608Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g10426Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g446Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g23309Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g372Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g10870Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g26567Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g22457Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cni-tag-18Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g18223Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00003.g215Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_00779Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_024156Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g00451Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g8050Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_X0265500Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrX_pilon.g18804Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00241563Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00267760Strongyloides rattiFrom_analysisWormBase-Compara
ParalogWBGene00014826Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
Structured_descriptionAutomated_descriptionEnriched in ABalppappa; ABarappppa; germ line; intestine; and muscle cell based on proteomic; Chronogram; tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; RNA-seq; and proteomic studies. Is affected by fifteen chemicals including D-glucose; Psoralens; and allantoin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: Phosphorylation site.Paper_evidenceWBPaper00065943
Curator_confirmed (2)
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDST14G12.3
Corresponding_transcriptT14G12.3.1
Other_sequence (67)
Associated_feature (11)
Experimental_infoRNAi_resultWBRNAi00018724Inferred_automaticallyRNAi_primary
WBRNAi00053341Inferred_automaticallyRNAi_primary
WBRNAi00035578Inferred_automaticallyRNAi_primary
Expr_patternChronogram891
Expr6697
Expr1027715
Expr1032600
Expr1156927
Expr2017238
Expr2035374
Drives_constructWBCnstr00003777
WBCnstr00034368
Construct_productWBCnstr00034368
AntibodyWBAntibody00000164
Microarray_results (18)
Expression_cluster (228)
Interaction (27)
Map_infoMapXPosition-9.6372Error0.03819
PositivePositive_cloneT14G12Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point4310
5649
Pseudo_map_position
RemarkGene name created from parsing 'genotype' field from CGC strain informationCGC_data_submission
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene