WormBase Tree Display for Gene: WBGene00004874

WBGene00004874 SMap: S_parent: Sequence: F35G12
  Identity: Version: 1
    Name (5)
    DB_info: Database: AceView gene 3F681
        WormQTL gene WBGene00004874
        WormFlux gene WBGene00004874
        NDB locus_tag CELE_F35G12.8
        Panther gene CAEEL|WormBase=WBGene00004874|UniProtKB=Q20060
          family PTHR43939
        NCBI gene 175603
        RefSeq protein NM_065534.8
        SwissProt UniProtAcc Q20060
        TREEFAM TREEFAM_ID TF101158
        UniProt_GCRP UniProtAcc Q20060
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:36 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: smc
    Allele (39)
    Strain: WBStrain00002271
      WBStrain00002159
      WBStrain00023523
    RNASeq_FPKM (74)
    GO_annotation (22)
    Contained_in_operon: CEOP3200
    Ortholog: WBGene00037531 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00061749 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00119446 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00191546 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00089965 Pristionchus pacificus From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00234061 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g4439 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g5410 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g11955 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g21869 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g14748 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g13870 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g6519 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g14541 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g3916 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g1279 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00624.g12916 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-smc-4 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold478.g1756 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp11.Scaffold478.g1757 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00664.g14177 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_14942 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_010071 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g04055 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g1000 Panagrellus redivivus From_analysis: WormBase-Compara
      Pan_g5387 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_30070000 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g7484 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00209751 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00061748 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00239156 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00263197 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00265112 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00266948 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00294874 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000004076 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0015391 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-020419-21 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:14013 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1917349 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1306680 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Paralog (10)
    Structured_description: Concise_description: The smc-4 gene encodes a homolog of the SMC4 subunit of mitotic condensin; SMC-4 acts with MIX-1 to enable chromosome segregation. Paper_evidence: WBPaper00005173
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable ATP binding activity and ATP hydrolysis activity. Involved in mitotic sister chromatid segregation and positive regulation of nematode male tail tip morphogenesis. Located in chromosome, centromeric region and condensed chromosome. Expressed in head; linker cell; and tail. Is an ortholog of human SMC4 (structural maintenance of chromosomes 4). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F35G12.8
    Corresponding_transcript: F35G12.8.1
    Other_sequence (30)
    Associated_feature: WBsf645103
      WBsf658848
      WBsf224763
  Experimental_info: RNAi_result (28)
    Expr_pattern: Chronogram1819
      Expr1858
      Expr5960
      Expr5961
      Expr11148
      Expr1012412
      Expr1032415
      Expr1150273
      Expr2015899
      Expr2034132
    Drives_construct: WBCnstr00002919
      WBCnstr00004457
      WBCnstr00018186
      WBCnstr00035348
    Construct_product: WBCnstr00035348
    Antibody: WBAntibody00000481
      WBAntibody00000482
      WBAntibody00000483
      WBAntibody00000484
      WBAntibody00002019
      WBAntibody00002959
    Microarray_results (20)
    Expression_cluster (164)
    Interaction (214)
    WBProcess: WBbiopr:00000099
  Map_info: Map: III Position: -3.04733 Error: 0.007437
    Positive: Positive_clone: F35G12 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 5151
        4157
    Pseudo_map_position
  Reference (21)
  Remark: Sequence connection from [Glotzer M]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene