WormBase Tree Display for Gene: WBGene00004806

WBGene00004806 SMap: S_parent: Sequence: T27F2
  Identity: Version: 1
    Name: CGC_name: skp-1 Person_evidence: WBPerson344
      Sequence_name: T27F2.1
      Molecular_name: T27F2.1
        T27F2.1.1
        CE06519
      Other_name: CELE_T27F2.1 Accession_evidence: NDB BX284605
      Public_name: skp-1
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:36 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: skp
    Allele (70)
    Strain: WBStrain00032959
      WBStrain00037077
      WBStrain00037471
    RNASeq_FPKM (74)
    GO_annotation (13)
    Contained_in_operon: CEOP5296
    Ortholog: WBGene00052328 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00041675 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00140155 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00134869 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00102569 Pristionchus pacificus From_analysis: OMA
            WormBase-Compara
      WBGene00226312 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g1828 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g2782 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g10795 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g827 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g750 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g22510 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g14238 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g2018 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g11625 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g3066 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g14409 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00595.g12601 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_05490.g19628 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-skp-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g16594 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00353.g9955 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_10642 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_018079 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g01156 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g11193 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_50151800 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrV_pilon.g15831 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00209974 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00237318 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00244009 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00245162 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00256172 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00292825 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000000030 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0004856 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-030131-571 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:16696 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1913604 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1561926 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Concise_description: skp-1 encodes the C. elegans ortholog of the SKI-binding protein (SKIP); skp-1 is predicted to function as a transcriptional cofactor and its activity is essential for embryogenesis and molting; skp-1 is also required for normal expression of several embryonic genes, as assayed by gfp reporter fusions; SKP-1 is widely expressed from embryogenesis through adulthood. Paper_evidence: WBPaper00005345
            WBPaper00026763
          Curator_confirmed: WBPerson1843
          Date_last_updated: 16 Mar 2007 00:00:00
      Automated_description: Involved in several processes, including molting cycle; reproductive process; and vulval development. Predicted to be part of spliceosomal complex. Expressed in egg-laying apparatus; hypodermis; pharynx; rectal muscle; and somatic nervous system. Human ortholog(s) of this gene implicated in breast carcinoma; hepatocellular carcinoma; and pancreatic cancer. Is an ortholog of human SNW1 (SNW domain containing 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:1793 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:16696)
      DOID:3459 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:16696)
      DOID:684 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:16696)
      DOID:1612 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:16696)
  Molecular_info: Corresponding_CDS: T27F2.1
    Corresponding_transcript: T27F2.1.1
    Other_sequence (44)
    Associated_feature: WBsf661754
      WBsf232533
      WBsf232534
      WBsf232535
  Experimental_info: RNAi_result (22)
    Expr_pattern: Expr1923
      Expr1924
      Expr1025947
      Expr1032385
      Expr1157880
      Expr2015833
      Expr2034066
    Drives_construct: WBCnstr00010522
      WBCnstr00035376
    Construct_product: WBCnstr00035376
    Microarray_results (21)
    Expression_cluster (100)
    Interaction (193)
  Map_info: Map: V Position: 3.232 Error: 0.001092
    Positive: Positive_clone: T27F2 Inferred_automatically (2)
    Pseudo_map_position
  Reference (18)
  Remark: Gene name created based on Pubmed 12084813 [krb 020719]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene