WormBase Tree Display for Gene: WBGene00004490

WBGene00004490 SMap: S_parent: Sequence: F37C12
  Identity: Version: 1
    Name: CGC_name: rps-21
      Sequence_name: F37C12.11
      Molecular_name: F37C12.11
        F37C12.11.1
        CE30779
      Other_name: CELE_F37C12.11 Accession_evidence: NDB BX284603
      Public_name: rps-21
    DB_info: Database: AceView gene 3I278
        WormQTL gene WBGene00004490
        WormFlux gene WBGene00004490
        NDB locus_tag CELE_F37C12.11
        Panther gene CAEEL|WormBase=WBGene00004490|UniProtKB=P49197
          family PTHR10442
        NCBI gene 176011
        RefSeq protein NM_066178.10
        SwissProt UniProtAcc P49197
        TREEFAM TREEFAM_ID TF300167
        UniProt_GCRP UniProtAcc P49197
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:35 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rps
    Allele: WBVar01500260
      WBVar01645365
      WBVar01499774
      WBVar01825495
      WBVar01499237
      WBVar02053330
      WBVar00837914
      WBVar00837915
      WBVar00837916
      WBVar00401240
    Legacy_information: Orthologous to yeast (S.cerevisiae) ribosomal protein rps21 using blastP
    RNASeq_FPKM (74)
    GO_annotation (15)
    Ortholog: WBGene00054720 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00036504 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            WormBase-Compara
      WBGene00144901 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00123264 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00224156 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g10023 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g15674 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g4654 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g16427 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g23904 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g4157 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g9766 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g13355 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g679 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g16157 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00021.g1295 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-rps-21 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold489.g2039 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      FL83_22013 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_009827 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g05503 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g9990 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_30239400 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g8103 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00245581 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00261588 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00285483 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000003672 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      SGD:S000001765 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0015521 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040426-1102 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:10409 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1913731 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:621038 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      RGD:2323583 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Concise_description: rps-21 encodes a small ribosomal subunit S21 protein; by homology, RPS-21 is predicted to function in protein biosynthesis; in C. elegans, RPS-21 activity is required for embryonic and germline development, as well as the overall health of the animal. Paper_evidence (2)
          Curator_confirmed: WBPerson1843
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to be a structural constituent of ribosome. Predicted to be involved in endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) and endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be located in cytosol; ribosome; and rough endoplasmic reticulum. Predicted to be part of cytosolic small ribosomal subunit. Is an ortholog of human RPS21 (ribosomal protein S21). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F37C12.11
    Corresponding_transcript: F37C12.11.1
    Other_sequence (285)
    Associated_feature: WBsf651180
      WBsf667046
      WBsf992955
      WBsf1015202
      WBsf226926
      WBsf226927
  Experimental_info: RNAi_result (29)
    Expr_pattern: Chronogram728
      Chronogram1946
      Expr5980
      Expr1011153
      Expr1032293
      Expr1150488
      Expr2015516
      Expr2033751
    Drives_construct: WBCnstr00003591
      WBCnstr00035445
    Construct_product: WBCnstr00035445
    Microarray_results (21)
    Expression_cluster (167)
    Interaction (260)
  Map_info: Map: III Position: -0.775211 Error: 0.000213
    Positive: Positive_clone: F37C12 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00028564
    WBPaper00033090
    WBPaper00035215
    WBPaper00035286
    WBPaper00038491
    WBPaper00049828
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene