WormBase Tree Display for Gene: WBGene00004286
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WBGene00004286 | SMap | S_parent | Sequence | D2013 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | rab-39 | Person_evidence | WBPerson451 | |||||
Sequence_name | D2013.1 | ||||||||
Molecular_name | D2013.1 | ||||||||
D2013.1.1 | |||||||||
CE30340 | |||||||||
Other_name | CELE_D2013.1 | Accession_evidence | NDB | BX284602 | |||||
Public_name | rab-39 | ||||||||
DB_info | Database | AceView | gene | 2J612 | |||||
WormQTL | gene | WBGene00004286 | |||||||
WormFlux | gene | WBGene00004286 | |||||||
NDB | locus_tag | CELE_D2013.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00004286|UniProtKB=Q18969 | |||||||
family | PTHR47979 | ||||||||
NCBI | gene | 183941 | |||||||
RefSeq | protein | NM_063583.4 | |||||||
SwissProt | UniProtAcc | Q18969 | |||||||
UniProt_GCRP | UniProtAcc | Q18969 | |||||||
OMIM | gene | 300774 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | rab | ||||||||
Allele (29) | |||||||||
Strain | WBStrain00055386 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (16) | |||||||||
Ortholog | WBGene00062267 | Caenorhabditis remanei | From_analysis (4) | ||||||
WBGene00039266 | Caenorhabditis briggsae | From_analysis (5) | |||||||
WBGene00143888 | Caenorhabditis brenneri | From_analysis (4) | |||||||
WBGene00104342 | Pristionchus pacificus | From_analysis (3) | |||||||
WBGene00132213 | Caenorhabditis japonica | From_analysis (4) | |||||||
WBGene00223291 | Brugia malayi | From_analysis | WormBase-Compara | ||||||
CBOVI.g6772 | Caenorhabditis bovis | From_analysis | WormBase-Compara | ||||||
CSP21.g6126 | Caenorhabditis parvicauda | From_analysis | WormBase-Compara | ||||||
CSP26.g10607 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
CSP28.g14350 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
CSP29.g21953 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
CSP31.g16701 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||||
CSP32.g4204 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
CSP38.g16089 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||||
CSP39.g8164 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
CSP40.g1692 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
Cang_2012_03_13_00586.g12514 | Caenorhabditis angaria | From_analysis | WormBase-Compara | ||||||
Cni-rab-39 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
Csp11.Scaffold562.g3942 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
Csp5_scaffold_04685.g33508 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
FL83_24263 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
GCK72_004721 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
OTIPU.nOt.2.0.1.g08586 | Oscheius tipulae | From_analysis | WormBase-Compara | ||||||
OTIPU.nOt.2.0.1.g13980 | Oscheius tipulae | From_analysis | WormBase-Compara | ||||||
Pan_g18097 | Panagrellus redivivus | From_analysis | WormBase-Compara | ||||||
Sp34_20301600 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
chrII_pilon.g5452 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00247357 | Onchocerca volvulus | From_analysis | WormBase-Compara | ||||||
WBGene00266899 | Strongyloides ratti | From_analysis | WormBase-Compara | ||||||
WBGene00287280 | Trichuris muris | From_analysis | WormBase-Compara | ||||||
WBGene00296870 | Trichuris muris | From_analysis | WormBase-Compara | ||||||
FB:FBgn0029959 | Drosophila melanogaster | From_analysis (9) | |||||||
ZFIN:ZDB-GENE-040426-1983 | Danio rerio | From_analysis (8) | |||||||
ZFIN:ZDB-GENE-050417-172 | Danio rerio | From_analysis (6) | |||||||
ZFIN:ZDB-GENE-070620-7 | Danio rerio | From_analysis (9) | |||||||
ZFIN:ZDB-GENE-061215-104 | Danio rerio | From_analysis (9) | |||||||
ZFIN:ZDB-GENE-131127-261 | Danio rerio | From_analysis (3) | |||||||
ZFIN:ZDB-GENE-131121-578 | Danio rerio | From_analysis (3) | |||||||
HGNC:16521 | Homo sapiens | From_analysis (9) | |||||||
HGNC:16499 | Homo sapiens | From_analysis (9) | |||||||
MGI:1915040 | Mus musculus | From_analysis (9) | |||||||
MGI:2441753 | Mus musculus | From_analysis (3) | |||||||
MGI:2442855 | Mus musculus | From_analysis (9) | |||||||
RGD:1311286 | Rattus norvegicus | From_analysis (9) | |||||||
RGD:1593983 | Rattus norvegicus | From_analysis (3) | |||||||
Paralog (32) | |||||||||
Structured_description | Concise_description | rab-39 encodes a small, monomeric Rab GTPase that is most closely related to the human and Drosophila Rab39 GTPases; by homology, RAB-39 is predicted to function as a membrane-associated GTPase required for intracellular vesicular trafficking and for regulation of endo- and exocytosis; however, as loss of rab-39 function via RNA-mediated interference (RNAi) does not result in any obvious abnormalities, the precise role of RAB-39 in C. elegans development and/or behavior is not yet known. | Paper_evidence (3) | ||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Enables GTP binding activity. Involved in positive regulation of response to oxidative stress. Predicted to be located in Golgi apparatus; cytoplasmic vesicle membrane; and plasma membrane. Expressed in head mesodermal cell; head neurons; hypodermis; rectal gland cell; and tail neurons. Human ortholog(s) of this gene implicated in Waisman syndrome and non-syndromic X-linked intellectual disability 72. Is an ortholog of human RAB39A (RAB39A, member RAS oncogene family) and RAB39B (RAB39B, member RAS oncogene family). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:0112059 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:16499) | ||||
DOID:0111781 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:16499) | ||||||
Molecular_info | Corresponding_CDS | D2013.1 | |||||||
Corresponding_CDS_history | D2013.1:wp74 | ||||||||
Corresponding_transcript | D2013.1.1 | ||||||||
Other_sequence (25) | |||||||||
Associated_feature | WBsf650420 | ||||||||
WBsf650421 | |||||||||
WBsf223635 | |||||||||
Experimental_info | RNAi_result | WBRNAi00101872 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00107759 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00091937 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00012560 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00030377 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00112237 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00107758 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00043437 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00101873 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr11318 | ||||||||
Expr1021236 | |||||||||
Expr1032121 | |||||||||
Expr1147433 | |||||||||
Expr2015226 | |||||||||
Expr2033460 | |||||||||
Drives_construct | WBCnstr00018768 | ||||||||
WBCnstr00035586 | |||||||||
Construct_product | WBCnstr00035586 | ||||||||
Microarray_results (18) | |||||||||
Expression_cluster (95) | |||||||||
Interaction (23) | |||||||||
Map_info | Map | II | Position | 1.15927 | Error | 0.011529 | |||
Positive | Positive_clone | D2013 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00029101 | ||||||||
WBPaper00030935 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00041898 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00058949 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |